BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0017.p         (65 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q1LHI8.1 Q1LHI8_RALME ABC-type transporter, permease component        108   4e-22
B3R7N6.1 B3R7N6_CUPTR Putative Branched-chain amino acid transpo...   107   6e-22
Q46VV9.1 Q46VV9_CUPPJ Inner-membrane translocator                     107   6e-22
Q0K5K6.1 Q0K5K6_CUPNH ABC-type transporter, permease component        106   9e-22
B2UGX1.1 B2UGX1_RALPJ Inner-membrane translocator                     105   3e-21

>Q1LHI8.1 Q1LHI8_RALME ABC-type transporter, permease component
          Length = 344

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 58/60 (96%)

Query: 1   VLKAIKDNQPRAVSLGYDVDRYKLLAFVLSAALTGLAGSTKALVLGFETLTDVHWSLSSA 60
           +LKAI++N+PRA+SLGYDVDR+KLLAFVLSAAL+GLAGS KALVLGFETLTDVHWS+S +
Sbjct: 201 ILKAIRENEPRAISLGYDVDRFKLLAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGS 260


>B3R7N6.1 B3R7N6_CUPTR Putative Branched-chain amino acid transport system
           permease, membrane component
          Length = 339

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query: 1   VLKAIKDNQPRAVSLGYDVDRYKLLAFVLSAALTGLAGSTKALVLGFETLTDVHWSLSSA 60
           +LKAIK+N+PRAVSLGYDVDR+KL AFVLSAAL+GLAGS KALVLGFETLTDVHWS+S +
Sbjct: 192 ILKAIKENEPRAVSLGYDVDRFKLTAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGS 251


>Q46VV9.1 Q46VV9_CUPPJ Inner-membrane translocator
          Length = 342

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 57/60 (95%)

Query: 1   VLKAIKDNQPRAVSLGYDVDRYKLLAFVLSAALTGLAGSTKALVLGFETLTDVHWSLSSA 60
           +LKAIK+N+PRA+SLGYDVDR+KL AFVLSAAL+GLAGS KALVLGFETLTDVHWS+S +
Sbjct: 198 ILKAIKENEPRAISLGYDVDRFKLTAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGS 257


>Q0K5K6.1 Q0K5K6_CUPNH ABC-type transporter, permease component
          Length = 351

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 57/60 (95%)

Query: 1   VLKAIKDNQPRAVSLGYDVDRYKLLAFVLSAALTGLAGSTKALVLGFETLTDVHWSLSSA 60
           +LKAIK+N+PRA+SLGYDVDR+KL AFVLSAAL+GLAGS KALVLGFETLTDVHWS+S +
Sbjct: 204 ILKAIKENEPRAISLGYDVDRFKLTAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGS 263


>B2UGX1.1 B2UGX1_RALPJ Inner-membrane translocator
          Length = 334

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 55/60 (91%)

Query: 1   VLKAIKDNQPRAVSLGYDVDRYKLLAFVLSAALTGLAGSTKALVLGFETLTDVHWSLSSA 60
           +LKAIK+N+PRA SLGYD DR+KLLAFVLSAALTGLAGS K LVLGFETLTDVHWS+S +
Sbjct: 190 ILKAIKENEPRATSLGYDTDRFKLLAFVLSAALTGLAGSLKTLVLGFETLTDVHWSMSGS 249