BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0096.p (205 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1VW98.1 F1VW98_9BURK DNA polymerase III alpha subunit 248 4e-64 F0FX41.1 F0FX41_9BURK DNA polymerase III, epsilon subunit 176 2e-42 Q47GA1.1 Q47GA1_DECAR DNA polymerase III, epsilon subunit 172 2e-41 E2M7P1.1 E2M7P1_PSESM Exonuclease 167 7e-40 B1JUB8.1 B1JUB8_BURCC DNA polymerase III, epsilon subunit EC=2.7... 167 8e-40 >F1VW98.1 F1VW98_9BURK DNA polymerase III alpha subunit Length = 216 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/198 (63%), Positives = 151/198 (76%) Query: 8 MLDFETTGLSPAQGARITEVAALRIVDGRVVERFVSLINCGAEVPYEITVLTGITQDMVD 67 M+ FETTG+SPA G R+TEVAALRIV G VV+RFVSLINC + I+ LTGITQ MVD Sbjct: 1 MMGFETTGMSPALGDRVTEVAALRIVGGVVVDRFVSLINCDVRISPFISQLTGITQAMVD 60 Query: 68 SAPPVERVLPELLRFIGSDALAAHNASFDAKFLAAEAERLDLQAGYSELVCSLLLSRRLL 127 APPVE+V+PEL+RFIGSDALAAHN SFD KFL AE+ RL + ++ ++CS+ LSRR+ Sbjct: 61 RAPPVEQVMPELVRFIGSDALAAHNVSFDEKFLLAESARLGIVPAHAGVICSVKLSRRVF 120 Query: 128 PGLSSYRLSSLADSLGIRFSGHAHRAEADAEVSAELLLHLSERLRGHHKCTRVDPTLLAA 187 PGL SY L +LA+SLGIRF G AHRAEADAEV++ L+LH++ L H+ VDP L Sbjct: 121 PGLRSYALGALANSLGIRFKGTAHRAEADAEVASALMLHIAAHLGDHYGIREVDPRFLQQ 180 Query: 188 INRLPAAKVPVFLQQQAA 205 INRL AAKVP FLQ+ A Sbjct: 181 INRLTAAKVPAFLQRPPA 198 >F0FX41.1 F0FX41_9BURK DNA polymerase III, epsilon subunit Length = 205 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 4 QPVVMLDFETTGLSPAQGARITEVAALRIVDGRVVERFVSLINCGAEVPYEITVLTGITQ 63 Q V +LDFETTGLSP G R TE+A + + DG++V+R+ SL+N G +P ++ LTGIT Sbjct: 2 QTVAVLDFETTGLSPNLGDRATEIAVILLRDGQIVDRYQSLMNAGRRIPSDVVALTGITN 61 Query: 64 DMVDSAPPVERVLPELLRFIGSDALAAHNASFDAKFLAAEAERLDLQAGYSELVCSLLLS 123 DM+ SAPP +V+ E F+G A+ AHNA FD +F AE RLD+ A ++ C++L++ Sbjct: 62 DMIASAPPAAKVMKEAAAFVGKHAVVAHNAGFDKRFWQAELGRLDVSAEHA-FACTMLVA 120 Query: 124 RRLLPGLSSYRLSSLADSLGIRFSGHAHRAEADAEVSAELLLHLSERLRGHHKCTRVDPT 183 RR+ P S+RLSSLA+ L + SG AHRA DAE++ L L + + R+D T Sbjct: 121 RRIYPDARSHRLSSLAEMLQLPKSGRAHRAMVDAEMAGHLWCRLQHDIARTYGLDRIDHT 180 Query: 184 LLAAINRLPAAKVPVFLQ 201 L+ + AKVP +L+ Sbjct: 181 LMTQVQATSKAKVPTYLR 198 >Q47GA1.1 Q47GA1_DECAR DNA polymerase III, epsilon subunit Length = 204 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/191 (48%), Positives = 126/191 (65%), Gaps = 1/191 (0%) Query: 6 VVMLDFETTGLSPAQGARITEVAALRIVDGRVVERFVSLINCGAEVPYEITVLTGITQDM 65 V ++DFETTGLSPAQG R TE+AA+ + +G+VV+R+ SL+N G +P I LTGI+ M Sbjct: 4 VAVIDFETTGLSPAQGDRATEIAAVILENGKVVDRYQSLMNAGVRIPSFIEQLTGISNAM 63 Query: 66 VDSAPPVERVLPELLRFIGSDALAAHNASFDAKFLAAEAERLDLQAGYSELVCSLLLSRR 125 + SAPP +V+ E+ F+G L AHNASFD KF AE R++LQ E CSLLL+RR Sbjct: 64 IRSAPPAAQVMREVSDFVGDIPLVAHNASFDCKFWDAEVARINLQR-CQEFACSLLLARR 122 Query: 126 LLPGLSSYRLSSLADSLGIRFSGHAHRAEADAEVSAELLLHLSERLRGHHKCTRVDPTLL 185 L+P S++L +L + + +G AHRA ADAE++A LL +L+ LR H +V LL Sbjct: 123 LMPLAPSHKLGALIEFAKLPVAGRAHRALADAEMAASLLAYLAGELRSKHGIQQVTHELL 182 Query: 186 AAINRLPAAKV 196 I LP AK+ Sbjct: 183 RKIQGLPKAKI 193 >E2M7P1.1 E2M7P1_PSESM Exonuclease Length = 204 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 126/198 (63%), Gaps = 1/198 (0%) Query: 6 VVMLDFETTGLSPAQGARITEVAALRIVDGRVVERFVSLINCGAEVPYEITVLTGITQDM 65 V ++DFETTG+SP G R TE+A + + GR+VERF SL+N G +P I LTGI+ +M Sbjct: 5 VAVIDFETTGISPNPGCRATEIAVVIMEQGRIVERFQSLMNAGVRIPAFIEGLTGISNNM 64 Query: 66 VDSAPPVERVLPELLRFIGSDALAAHNASFDAKFLAAEAERLDLQAGYSELVCSLLLSRR 125 + +AP ERV+ ++ F+GS L AHNASFD KF E R+ + S CS+LL+RR Sbjct: 65 IRTAPSAERVMGDVADFVGSTPLVAHNASFDQKFWDYELSRIQRKREQS-FACSMLLARR 123 Query: 126 LLPGLSSYRLSSLADSLGIRFSGHAHRAEADAEVSAELLLHLSERLRGHHKCTRVDPTLL 185 L+PG +++L +L + +G AHRA ADAE++A L +L+ LR H + +L Sbjct: 124 LMPGAPNHKLGTLTSYARLPNTGKAHRAMADAEMAANLTAYLTNELRNTHGIAGISHQML 183 Query: 186 AAINRLPAAKVPVFLQQQ 203 ++ ++PAAK+ L++Q Sbjct: 184 CSLQKVPAAKIGETLKRQ 201 >B1JUB8.1 B1JUB8_BURCC DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 212 Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 84/198 (42%), Positives = 125/198 (63%), Gaps = 1/198 (0%) Query: 4 QPVVMLDFETTGLSPAQGARITEVAALRIVDGRVVERFVSLINCGAEVPYEITVLTGITQ 63 Q V +LDFETTGLSP G R TE+A + + DG+VV+RF SL+N G +P ++ LTGIT Sbjct: 9 QTVAVLDFETTGLSPNLGDRATEIAVILLRDGQVVDRFQSLMNAGRRIPSDVVALTGITN 68 Query: 64 DMVDSAPPVERVLPELLRFIGSDALAAHNASFDAKFLAAEAERLDLQAGYSELVCSLLLS 123 DM+ +APP V+ E F+G A+ AHNA FD +F +E L + A ++ C++L++ Sbjct: 69 DMIATAPPASEVMKEAAAFVGKHAVVAHNAGFDKRFWQSELGMLGMSADHA-FACTMLVA 127 Query: 124 RRLLPGLSSYRLSSLADSLGIRFSGHAHRAEADAEVSAELLLHLSERLRGHHKCTRVDPT 183 RR+ P S+RLSSLA+ L + +G AHRA DAE++ L L + + + R+D Sbjct: 128 RRIYPDARSHRLSSLAEMLRLPQTGRAHRAMVDAEMAGHLWCRLQQDISRTYGLDRIDHA 187 Query: 184 LLAAINRLPAAKVPVFLQ 201 L++ + AKVP++L+ Sbjct: 188 LMSQVQVTTKAKVPMYLR 205