BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0094.p (301 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IU64.1 D8IU64_HERSS LysR family transcription regulator protein 513 e-143 Q0K555.1 Q0K555_CUPNH Transcriptional regulator, LysR-family 288 6e-76 Q1LAT8.1 Q1LAT8_RALME Transcriptional regulator, LysR family 287 1e-75 B2AHL7.1 B2AHL7_CUPTR Putative transcriptional regulator, LysR f... 285 4e-75 Q46Q42.1 Q46Q42_CUPPJ Regulatory protein, LysR:LysR, substrate-b... 281 1e-73 >D8IU64.1 D8IU64_HERSS LysR family transcription regulator protein Length = 335 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/297 (82%), Positives = 275/297 (92%) Query: 1 MQANISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVT 60 MQ NISTRLLQ FLAL DCRHFGHAA+RCHVSQSAFS MIQK+EAAAGA+LF RDTRNVT Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTAEGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQ 120 LT EGELFV+VARQL++DIEAAFS+MSDYVARRKG+V+IAALPSLAAGWLPPVLA YR + Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 YPGVTVELFDALSDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLA 180 YPGVTVELFDA+SD CL+ LR GK DIALTAPGPNL+EFDT+PLC DPFYLVCR+DHKLA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 KKRVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGV 240 KR I+VPQLAGCE+IHLARSTSVRQHLDA+L+P GV++TGLEVEHLATVA LIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRS 297 S+VPELTLFQFR PNLVAIPL+AP+L RPLLIV KERSLS+AAQGLLEL++ K+++ Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKA 297 >Q0K555.1 Q0K555_CUPNH Transcriptional regulator, LysR-family Length = 301 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 153/299 (51%), Positives = 202/299 (67%), Gaps = 3/299 (1%) Query: 4 NISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVTLTA 63 N+S + L+ F+AL R+F AA CH+SQSAFS ++Q LE AG++LF R TR+V L++ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQYPG 123 +G F + AR+L+ D E AF ++ + RRKG+VSIAALPSLA G LPP+LA +RA YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAGGDLPPLLAQFRALYPG 121 Query: 124 VTVELFDALSDHCLNYLRQGKADIALTAPGPNLME-FDTQPLCEDPFYLVCRRDHKLAKK 182 + +ELFD L+D C+ +RQG+AD AL AP P E +PL D F+LVC DH LA+K Sbjct: 122 IALELFDQLADGCIELVRQGRADFAL-APAPAQDEDLRVEPLVRDTFHLVCPADHALARK 180 Query: 183 RVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGVSL 242 R I LAG I L+R+TSVRQHLDA L P+ + + +EVEHLATVA L+++GLGVS Sbjct: 181 RRITPQMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSA 239 Query: 243 VPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 VP L LFQFR L PL P LVR + +V+ K+R S AA +++ +Q R G P Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQAFYRGGKPP 298 >Q1LAT8.1 Q1LAT8_RALME Transcriptional regulator, LysR family Length = 299 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/299 (50%), Positives = 205/299 (68%), Gaps = 3/299 (1%) Query: 1 MQANISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVT 60 M +N+S + L+ F+AL R+F AA+ CH+SQSAFS +IQ LE AG +LF R TR+V Sbjct: 1 MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD 60 Query: 61 LTAEGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQ 120 L+ +G F E+AR+L+ D EAAF ++ D+ RRKG+V+IAALPSLA G LPP+LA++ Q Sbjct: 61 LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ 120 Query: 121 YPGVTVELFDALSDHCLNYLRQGKADIALTAPGP-NLMEFDTQPLCEDPFYLVCRRDHKL 179 YPG+ +EL D L+D C+ ++R+G+AD AL AP P + + L D F+LVC DH L Sbjct: 121 YPGIALELHDQLADGCIEFVRRGQADFAL-APAPAQDADLRVEALVRDSFHLVCPADHPL 179 Query: 180 AKKRVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLG 239 A KR + LAG I L+R++SVRQHLDA L P+ +N +EVEHLATVA L+E+GLG Sbjct: 180 AGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLK-LNGVMEVEHLATVAALVEAGLG 238 Query: 240 VSLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSG 298 VS+VP L LFQFR L P+ P LVR + +V+ K+R S AA +L+ ++ RSG Sbjct: 239 VSVVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSG 297 >B2AHL7.1 B2AHL7_CUPTR Putative transcriptional regulator, LysR family Length = 301 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 152/299 (50%), Positives = 203/299 (67%), Gaps = 3/299 (1%) Query: 4 NISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVTLTA 63 N+S + L+ F+AL R+F AA CH+SQSAFS ++Q LE AG++LF R TR+V L+ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELST 61 Query: 64 EGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQYPG 123 +G F + AR+L+ D E AF ++ + RRKG+VSIAALPSLA G LPP+LA +RA+YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAGGDLPPLLAQFRARYPG 121 Query: 124 VTVELFDALSDHCLNYLRQGKADIALTAPGP-NLMEFDTQPLCEDPFYLVCRRDHKLAKK 182 + +ELFD L+D C+ +RQG+AD AL AP P + +PL D F+LVC DH LA+K Sbjct: 122 IELELFDQLADGCIALVRQGRADFAL-APAPAQDDDLRVEPLVRDTFHLVCPADHALARK 180 Query: 183 RVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGVSL 242 R I LAG I L+R+TSVRQHLDA L P+ + + +EVEHLATVA L+++GLG+S Sbjct: 181 RRITPEMLAGLPFIQLSRTTSVRQHLDAALHPLRLASV-MEVEHLATVAALVQAGLGISA 239 Query: 243 VPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 VP L LFQFR L PL P LVR + +V+ ++R S AA ++E +Q R G AP Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLRDRGDSAAAAAMIEALQAFYRGGKAP 298 >Q46Q42.1 Q46Q42_CUPPJ Regulatory protein, LysR:LysR, substrate-binding Length = 297 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/290 (50%), Positives = 203/290 (70%), Gaps = 3/290 (1%) Query: 4 NISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVTLTA 63 N+S + L+ F+AL R+F AA CH+SQSAFS ++Q LE AG++LF R TR+V L+A Sbjct: 2 NLSVKHLRAFVALATHRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSA 61 Query: 64 EGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQYPG 123 +G F E AR+L+ D EAAF ++ + RRKG+VSIAALPS+A G LPP+LAA+R +YPG Sbjct: 62 DGMRFEETARRLLGDFEAAFEDLRAHAERRKGRVSIAALPSIAGGDLPPLLAAFRQRYPG 121 Query: 124 VTVELFDALSDHCLNYLRQGKADIALTAPGP-NLMEFDTQPLCEDPFYLVCRRDHKLAKK 182 + +ELFD L+D C++ +R+G+AD AL AP P + +PL D F+LVC H LA+K Sbjct: 122 IALELFDQLADGCIDLVRRGRADFAL-APAPVQDDDLRVEPLVHDTFHLVCPTTHVLARK 180 Query: 183 RVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGVSL 242 R I LAG IHL+R++SVRQHLDA L P+ +++ +EVEHLATVA L+++GLGVS+ Sbjct: 181 RRITPQMLAGQPFIHLSRTSSVRQHLDAALHPLK-LSSVMEVEHLATVAALVQAGLGVSV 239 Query: 243 VPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQ 292 VP L LFQF+ L PL P LVR + +V+ ++R S AA +++ + Sbjct: 240 VPSLALFQFQRDGLAVRPLQMPSLVRDICLVRLRDRGDSAAAAAMIDCLH 289