BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0078.p         (177 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SZJ5.1 A6SZJ5_JANMA Muramoyltetrapeptide carboxypeptidase EC=3...   250   6e-65
A4G4W9.1 A4G4W9_HERAR Muramoyltetrapeptide carboxypeptidase (LD-...   239   1e-61
D8IU50.1 D8IU50_HERSS Microcin C7 resistance protein                  226   1e-57
F1VVS1.1 F1VVS1_9BURK Muramoyltetrapeptide carboxypeptidase           218   2e-55
D8NTW4.1 D8NTW4_RALSO Muramoyltetrapeptide carboxypeptidase EC=3...   209   1e-52

>A6SZJ5.1 A6SZJ5_JANMA Muramoyltetrapeptide carboxypeptidase EC=3.4.17.13
          Length = 320

 Score =  250 bits (638), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 137/177 (77%)

Query: 1   MLCSDFGAETPSAMTMNSFWRTLTQPTQTIAVEEAGNPALKVSGKLWGGNLAMVVHLLGT 60
           MLC DF  +  SA T+N+FWR +TQP  T+ V+   NP L+ SG LWGGNLAM+ HL+G+
Sbjct: 143 MLCDDFVRDELSAYTLNNFWRCITQPEHTLTVQAKDNPQLEASGTLWGGNLAMLAHLVGS 202

Query: 61  PYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLLGDFSNYRLSDYDNGYN 120
           PY PQV GGILFVEDVNEHPYRVERM+LQL HAGVL RQKA+LLGDFS YRL+DYDNGY+
Sbjct: 203 PYLPQVPGGILFVEDVNEHPYRVERMVLQLLHAGVLDRQKALLLGDFSAYRLTDYDNGYD 262

Query: 121 FEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESDARGFSLRLSGYPILS 177
           FEQM+ Y R HL  P+LTGLPFGH  D+ +L  GA A L S A GFSL + GYP L+
Sbjct: 263 FEQMVAYLRSHLPVPVLTGLPFGHGRDKATLVAGALATLNSRADGFSLTMQGYPFLA 319


>A4G4W9.1 A4G4W9_HERAR Muramoyltetrapeptide carboxypeptidase
           (LD-carboxypeptidase A) EC=3.4.17.13
          Length = 316

 Score =  239 bits (609), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/173 (64%), Positives = 134/173 (77%)

Query: 1   MLCSDFGAETPSAMTMNSFWRTLTQPTQTIAVEEAGNPALKVSGKLWGGNLAMVVHLLGT 60
           MLC DF  +  SA T+N+FW+ LTQP  TI  +   NP L+V G LWGGNLAM+ HL+G+
Sbjct: 138 MLCDDFVRDELSAYTLNNFWQCLTQPAHTITAQTENNPQLQVKGTLWGGNLAMLTHLVGS 197

Query: 61  PYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLLGDFSNYRLSDYDNGYN 120
           P+ P++DGGIL VEDVNEHPYRVERM+LQL HAGVL  Q+AVLLGDFS YRLSDYDNGY+
Sbjct: 198 PWLPKIDGGILCVEDVNEHPYRVERMMLQLLHAGVLDGQQAVLLGDFSGYRLSDYDNGYD 257

Query: 121 FEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESDARGFSLRLSGY 173
           F QML Y R HL  P+LTGLPFGH  D+ +L +G+ AEL +D+  FSL +SGY
Sbjct: 258 FAQMLAYLRAHLPVPVLTGLPFGHGRDKATLVLGSRAELVADSVSFSLTMSGY 310


>D8IU50.1 D8IU50_HERSS Microcin C7 resistance protein
          Length = 333

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/194 (55%), Positives = 138/194 (71%), Gaps = 17/194 (8%)

Query: 1   MLCSDFGAETPSAMTMNSFWRTLTQPTQTIA----------------VEEAGNPALKVSG 44
           MLC DFGAETP    +  FW+TLT P  T+                   +  +P ++  G
Sbjct: 138 MLCGDFGAETPDWQALACFWKTLTSPQVTVRNYSGPDGMDRAPIGDRRTDPASPVVRCEG 197

Query: 45  KLWGGNLAMVVHLLGTPYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLL 104
           KLWGGNLAM+ H++G P F  V+GGILF+EDVNEHP+RVERM+LQL  AGVLARQ+A+LL
Sbjct: 198 KLWGGNLAMMAHMVGHPQFAPVEGGILFLEDVNEHPFRVERMILQLHQAGVLARQRAILL 257

Query: 105 GDFSNYRLSDYDNGYNFEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESD-A 163
           GDFS YRL++ DNGY+F QML + RQH++ P++TGLPFGH+ D V+LP+GAHA L++  A
Sbjct: 258 GDFSGYRLAEIDNGYDFTQMLAFLRQHIATPIVTGLPFGHVRDLVTLPIGAHAVLDAQGA 317

Query: 164 RGFSLRLSGYPILS 177
            GF+L LS YP L+
Sbjct: 318 DGFTLTLSDYPTLT 331


>F1VVS1.1 F1VVS1_9BURK Muramoyltetrapeptide carboxypeptidase
          Length = 304

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 127/176 (72%)

Query: 1   MLCSDFGAETPSAMTMNSFWRTLTQPTQTIAVEEAGNPALKVSGKLWGGNLAMVVHLLGT 60
           MLC DF     S  T    W+ LT     + VE+  +P +  SG LWGGNLAMV HL+G+
Sbjct: 126 MLCDDFTRAPASDFTHAHCWQCLTSERTVVRVEQPDSPPVDASGILWGGNLAMVAHLVGS 185

Query: 61  PYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLLGDFSNYRLSDYDNGYN 120
           PY P + GGILF+ED+NEHP+RVERMLLQL HAGVLA+Q A++LGDFS Y+LS+ DNG+ 
Sbjct: 186 PYLPHITGGILFLEDINEHPFRVERMLLQLLHAGVLAQQSAIVLGDFSGYKLSEIDNGFC 245

Query: 121 FEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESDARGFSLRLSGYPIL 176
           FE ML   R  L  P+LTGLPFGHI D+V+LPVGA A L SDA G++L +SGYP L
Sbjct: 246 FESMLERLRATLPVPVLTGLPFGHIVDKVTLPVGAPATLNSDASGWTLTVSGYPHL 301


>D8NTW4.1 D8NTW4_RALSO Muramoyltetrapeptide carboxypeptidase EC=3.4.17.13
          Length = 308

 Score =  209 bits (532), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 2   LCSDFGAETPSAMTMNSFWRTLTQPTQTIAVE--EAGNPAL--KVSGKLWGGNLAMVVHL 57
           +CSDFG ET     +  FW  L  P  T+ V+  + G+ A   + +G LWGGNLAM+  L
Sbjct: 128 VCSDFGLETVDPFMVEHFWGILRNPAYTLRVDAPQPGDCARPGRYAGTLWGGNLAMLCSL 187

Query: 58  LGTPYFPQVDGGILFVEDVNEHPYRVERMLLQLEHAGVLARQKAVLLGDFSNYRLSDYDN 117
           +GTPY P +  GILFVED+NEHPYRVERMLLQL+ AGVL  Q+A++LGDFS Y+ + YD 
Sbjct: 188 VGTPYLPDIRDGILFVEDINEHPYRVERMLLQLQQAGVLDAQQALVLGDFSGYKTTPYDA 247

Query: 118 GYNFEQMLGYARQHLSAPLLTGLPFGHIADRVSLPVGAHAELESDARGFSLRLSGYPIL 176
           GY F+ ML Y  +HLS P+++GLPFGH   + +LPVGA AEL+ DA GF+LRLSGYP L
Sbjct: 248 GYGFDTMLAYLAEHLSIPVVSGLPFGHCPTKATLPVGAQAELDVDADGFTLRLSGYPTL 306