BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (294 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4E478.1 D4E478_SEROD LysR family transcriptional regulator 542 e-152 Q1LFB4.1 Q1LFB4_RALME Transcriptional regulator, LysR family 316 2e-84 E5AR29.1 E5AR29_BURRH Transcriptional regulators, LysR family 309 3e-82 Q1QPF6.1 Q1QPF6_NITHX Transcriptional regulator, LysR family 286 3e-75 D8MZV1.1 D8MZV1_RALSO Transcriptional regulator, LysR family 281 1e-73 >D4E478.1 D4E478_SEROD LysR family transcriptional regulator Length = 294 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/292 (92%), Positives = 278/292 (95%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +LNGISLDYLRTFVAAADHGSFSAAGR IGRAQSVVSQTIASLEGQLGV LFERVGRYPK Sbjct: 1 MLNGISLDYLRTFVAAADHGSFSAAGRVIGRAQSVVSQTIASLEGQLGVTLFERVGRYPK 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPH CLTDALGSFK Sbjct: 61 LTVQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHRCLTDALGSFKAH 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F STPLRLHVEALGRVAELV+ GQCSLGITGTLPFLPPGLAAERLF+EEM+TV APGSPL Sbjct: 121 FPSTPLRLHVEALGRVAELVIKGQCSLGITGTLPFLPPGLAAERLFNEEMITVAAPGSPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 GR GPIAFRELLDETQLVLTDRSSLT+GVDYGVQG+NIWRLADLG+KHAFLRAGLGWGH Sbjct: 181 AGRNGPIAFRELLDETQLVLTDRSSLTNGVDYGVQGENIWRLADLGSKHAFLRAGLGWGH 240 Query: 241 MPRWLINEDVKEGRLVRIELEGPSAGLLPFQATYLSDRLPGPAGRWLLERFQ 292 MPRWLI ED+KEGRLVRIELEGPSAGLLPFQA Y SDRLPGPAGRWLLERFQ Sbjct: 241 MPRWLIGEDLKEGRLVRIELEGPSAGLLPFQAIYPSDRLPGPAGRWLLERFQ 292 >Q1LFB4.1 Q1LFB4_RALME Transcriptional regulator, LysR family Length = 304 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 162/294 (55%), Positives = 204/294 (69%), Gaps = 2/294 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+ +SLD LRTF+AA D GSFSAAGR + RAQSVVS T+A+LEGQ+GV LF+R GRYP+ Sbjct: 1 MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPR 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGT LLA AR VV G D + AR+ + GLE ELS+VVDVM+P LTDA+G+F++ Sbjct: 61 LTEQGTALLAQARLVVSGMDGFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKA 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F TPLRL+VEALG V + VL QC LGI+G++P +P + AE+L MVTV +P PL Sbjct: 121 FPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVMDAEKLLDVPMVTVTSPSHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 R G + R+L QLVLTDR+SLT G+ + V W LADLGAKHAFLRAG GWGH Sbjct: 181 ATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH 240 Query: 241 MPRWLINEDVKEGRLVRIELE--GPSAGLLPFQATYLSDRLPGPAGRWLLERFQ 292 MP ++ D+ G LVR+++E P + A Y D PGPAG+W L R + Sbjct: 241 MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLK 294 >E5AR29.1 E5AR29_BURRH Transcriptional regulators, LysR family Length = 300 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/296 (54%), Positives = 203/296 (68%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+G+SLD LRTF+AAAD GSFSAAGR + RAQSVVSQT+A+LE Q+ V LF+R RYP+ Sbjct: 1 MLDGVSLDQLRTFIAAADEGSFSAAGRRLRRAQSVVSQTLANLEDQIDVQLFDRSSRYPR 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGT LL A VV AD +KAR+ + GLE ELS+VVDVM+P LT A+G F++ Sbjct: 61 LTEQGTALLVQAHLVVSAADDFKSKARAIAQGLEPELSVVVDVMYPMASLTAAVGEFRDA 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F TPLRL+VEALG V VL+ +C LGI+G++P +P + AE+L MVTV AP PL Sbjct: 121 FPHTPLRLYVEALGAVMRPVLDRECRLGISGSMPAVPKMVDAEKLLDVPMVTVAAPAHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 + I REL + QLVLTDR++LT G +GV WRLADLGAKHAFLRAG GWGH Sbjct: 181 ASIKRVIRLRELEEHVQLVLTDRTTLTEGKTFGVLSPLTWRLADLGAKHAFLRAGFGWGH 240 Query: 241 MPRWLINEDVKEGRLV--RIELEGPSAGLLPFQATYLSDRLPGPAGRWLLERFQST 294 MP ++++D+ G LV RIE P + A Y D PG AGRW L+R + + Sbjct: 241 MPVPMVHDDIVSGELVPLRIEHFQPHTPPIAMFAIYRKDTPPGFAGRWFLDRLKHS 296 >Q1QPF6.1 Q1QPF6_NITHX Transcriptional regulator, LysR family Length = 309 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/296 (51%), Positives = 195/296 (65%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L +S D LR FVAAAD GSFSAA R + R QS VS+ I SLE QLGV LF+R GRYPK Sbjct: 1 MLESVSFDQLRMFVAAADEGSFSAAARRVRRTQSAVSEAILSLETQLGVVLFDRAGRYPK 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT G LLADAR V+ G DA+ A+A+ + GLE+EL+ V+DV P + +A F+ + Sbjct: 61 LTTDGVVLLADARAVISGVDAMKARAKGIAGGLEAELTAVLDVFLPIEVIAEAAREFRIQ 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F +TPLR++VEALG + VL+G+ S+G+ G+LP LPPGL ERLF +++ V A PL Sbjct: 121 FPATPLRIYVEALGGAVQPVLDGRASIGVVGSLPTLPPGLIKERLFDVKLMMVAAASHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 +G I EL QLVLTDRS+LT G GV + W LADL AKHAFL +GLG+G Sbjct: 181 ASYRGTIPKEELARHVQLVLTDRSTLTEGRTIGVMSPSTWHLADLFAKHAFLISGLGFGG 240 Query: 241 MPRWLINEDVKEGRLVRIEL-EGPSAGL-LPFQATYLSDRLPGPAGRWLLERFQST 294 MP + D+ +GRLV + + E P GL LP A Y PGPAGRW++ER ++ Sbjct: 241 MPLHTVARDIAKGRLVELSIEEAPPGGLPLPMFAVYREGEPPGPAGRWMIERLKNC 296 >D8MZV1.1 D8MZV1_RALSO Transcriptional regulator, LysR family Length = 299 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/296 (51%), Positives = 199/296 (67%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+G+SLD LR F+A D GSFSAA R + RAQS+VS +A+LE QLGVALF+R RYP+ Sbjct: 1 MLDGVSLDQLRAFIATVDAGSFSAAARKLRRAQSMVSGLVANLEDQLGVALFDRSRRYPQ 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT +GT LLADAR VV G D + ++A+ + GLE EL +VVDV FP +++ +F+ER Sbjct: 61 LTTEGTVLLADARSVVGGIDGMKSRAKGMTKGLEPELCVVVDVFFPIQMISEVAKAFRER 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F PLRL+VEALG + VL+G+ S+GI G+LP +P L AE+L + V V A PL Sbjct: 121 FPMVPLRLYVEALGGAYQPVLDGRASVGIVGSLPTVPASLTAEKLTTVGFVMVAAQDHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 +GPIA +L TQLVLTDRS L++G ++GV W LADL AKHAFL +GLGWG Sbjct: 181 AALRGPIAKEQLARHTQLVLTDRSDLSAGREFGVFSGLTWHLADLFAKHAFLLSGLGWGG 240 Query: 241 MPRWLINEDVKEGRLVRIEL-EGPSAGL-LPFQATYLSDRLPGPAGRWLLERFQST 294 MP + D+ GRLV +++ E P GL + A Y + PGPAGRWL+ER + Sbjct: 241 MPLHAVQADLDAGRLVELQIDEVPPGGLSMQMSAAYPTASPPGPAGRWLIERLRDC 296