BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0060.p         (229 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IU37.1 D8IU37_HERSS Two component response regulator protein        428   e-118
Q47I71.1 Q47I71_DECAR Response regulator receiver:Transcriptiona...   322   2e-86
E4QNJ2.1 E4QNJ2_METS6 Two component transcriptional regulator, w...   322   4e-86
C6XD74.1 C6XD74_METSD Two component transcriptional regulator, w...   321   6e-86
D9SHT0.1 D9SHT0_GALCS Two component transcriptional regulator, w...   308   6e-82

>D8IU37.1 D8IU37_HERSS Two component response regulator protein
          Length = 229

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/229 (88%), Positives = 218/229 (95%)

Query: 1   MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60
           MSKVLLIDDD+ELVDMLKEYLEQEKFEV VAYDGE+G  EAL+GQYAI VLDVMMPRLNG
Sbjct: 1   MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60

Query: 61  LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120
           ++TLRRIRAKS++PV+MLTAKGDDTDRIIGLELGADDYVPKPC+PRE+ AR+RAILRR  
Sbjct: 61  VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120

Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180
            +N + SPYSPLAVGALSMWPEQRRATW+G+PLELTSSEFNLLEVLARNAGKPVSKQHLS
Sbjct: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180

Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229
           EQGLGRPLARFDRNIDVHLSSIRQKIA LGSDKSCIQTVYRLGYQFIKE
Sbjct: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229


>Q47I71.1 Q47I71_DECAR Response regulator receiver:Transcriptional regulatory
           protein, C-terminal
          Length = 226

 Score =  322 bits (825), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 183/229 (79%), Gaps = 3/229 (1%)

Query: 1   MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60
           M  +LL+DDD+EL  ML++YL Q+ FE    +DGESGVVEALSG YAIV LDVMMP ++G
Sbjct: 1   MPHILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISG 60

Query: 61  LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120
           +E LRRIRA SN+PVLMLTAKGDD DRI+GLELGADDYVPKPC PREL AR+RAILRRT 
Sbjct: 61  IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120

Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180
           +     +   P+  G L+++PEQRR  W G P+++TS+EFNL+EVLARNAG+PVSK  L 
Sbjct: 121 LVE---AASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLC 177

Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229
           EQ LGRPLARFDR+IDVHLSSIR K+  L   +SCIQTVYR GYQ IKE
Sbjct: 178 EQALGRPLARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQLIKE 226


>E4QNJ2.1 E4QNJ2_METS6 Two component transcriptional regulator, winged helix
           family
          Length = 234

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%)

Query: 1   MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60
           M+KVLLIDDD+ELV MLKEYLEQE F+  VAYDGESG  +AL   Y +++LDVMMP++NG
Sbjct: 8   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67

Query: 61  LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120
           ++ LR IRA+ N PVLMLTAKG+D DRI+GLELGADDYVPKPCTPRE+ ARVRAILRRT 
Sbjct: 68  IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRT- 126

Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180
               D++    + VGAL++WPEQRRA WSG  LELTS+EFNLLEVL R+AG+ VSK  LS
Sbjct: 127 -QPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 185

Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229
            QGLGRPLARFDR+IDVHLSSIRQKI    + +  IQTVYR+GYQ ++E
Sbjct: 186 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 234


>C6XD74.1 C6XD74_METSD Two component transcriptional regulator, winged helix
           family
          Length = 227

 Score =  321 bits (822), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%)

Query: 1   MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60
           M+KVLLIDDD+ELV MLKEYLEQE F+  VAYDGESG  +AL   Y +++LDVMMP++NG
Sbjct: 1   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60

Query: 61  LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120
           ++ LR IRA+ N PVLMLTAKG+D DRI+GLELGADDYVPKPCTPRE+ ARVRAILRRT 
Sbjct: 61  IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRT- 119

Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180
               D++    + VGAL++WPEQRRA WSG  LELTS+EFNLLEVL R+AG+ VSK  LS
Sbjct: 120 -QPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 178

Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229
            QGLGRPLARFDR+IDVHLSSIRQKI    + +  IQTVYR+GYQ ++E
Sbjct: 179 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 227


>D9SHT0.1 D9SHT0_GALCS Two component transcriptional regulator, winged helix
           family
          Length = 234

 Score =  308 bits (788), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/228 (66%), Positives = 183/228 (80%), Gaps = 1/228 (0%)

Query: 2   SKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNGL 61
           +KVLL+DDD+EL  ML+ YLE+E FEV+  +DGESG+ EAL G + I VLDVMMP  +G+
Sbjct: 8   TKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKSGI 67

Query: 62  ETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTVI 121
           + L +IRA+  +PVLMLTA+GDD DRIIGLELGADDYVPKPCTPRELTAR+RAILRR+  
Sbjct: 68  DVLVQIRAQGAMPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRRSSG 127

Query: 122 DNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLSE 181
                S  + +A G LS+WPEQRRA W+G+PLELTS+EFNLLEVLARNAG+ VSK  LSE
Sbjct: 128 AESALSSSTVIA-GVLSIWPEQRRAEWAGKPLELTSTEFNLLEVLARNAGQVVSKSELSE 186

Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229
           Q LGRPLARFDR+IDVHLSSIR+K+  L   +S I  V+  GYQFI+E
Sbjct: 187 QALGRPLARFDRSIDVHLSSIRRKLEPLPDGRSRILAVFNKGYQFIRE 234