BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0038.p (264 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IU30.1 D8IU30_HERSS tRNA/rRNA methyltransferase protein EC=2.1... 380 e-103 F1W2S2.1 F1W2S2_9BURK RNA methyltransferase 374 e-102 A6SZN6.1 A6SZN6_JANMA RNA methyltransferase, TrmH family 362 3e-98 A4G4T6.1 A4G4T6_HERAR tRNA/rRNA methyltransferase SpoU-like 355 3e-96 C3XAS1.1 C3XAS1_OXAFO RNA methyltransferase 338 5e-91 >D8IU30.1 D8IU30_HERSS tRNA/rRNA methyltransferase protein EC=2.1.1.- Length = 263 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/259 (71%), Positives = 218/259 (84%) Query: 1 MKTISSRDNPLYKELKQLATSAQARRKAGRSLLDGVHLAQAYLQGAGKPAFCIVAESALH 60 MK I+S+DNPL+KELKQLA+S+QARR+AG+SLLDGVHLAQA+LQ G P C+VAESA + Sbjct: 1 MKLITSKDNPLFKELKQLASSSQARRRAGQSLLDGVHLAQAWLQHRGAPQLCVVAESAQY 60 Query: 61 HAEVAPVLAQCEAAGSQCICLTDALYQAASQVENGVGLLLVIATPQPSAPTALTTSAVLL 120 H EVAP+LAQCEA +QC+ L D LY A S V+NGVGL L++ATP SAP ALT SAVLL Sbjct: 61 HPEVAPILAQCEALQAQCLVLADKLYDAVSTVDNGVGLFLLVATPVASAPKALTESAVLL 120 Query: 121 DGLQDPGNLGSILRSAAAAGIGQVFCSAGTAAAWSPKVLRAGMGAHFQLEIFENADLLSL 180 DGLQDPGNLGSILRSAAAAG+ QVFCS GT AAWSPKVLRAGMGAHF L+I E+ADL++L Sbjct: 121 DGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGAHFVLDIVEDADLVAL 180 Query: 181 CKGSAIPVLATSSYAQKNIYQTDLTQAVAWLFGHEGQGVADDLLDAASDKVVIPHLGEME 240 C S IP+LATSS+A + IY DL+ VAWL GHEGQGV+ L +AA+ +VVIPHLG+ME Sbjct: 181 CAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEVVIPHLGQME 240 Query: 241 SLNVAAAAAVCFFEQVRQK 259 SLNVAAAAAVC FEQ+RQ+ Sbjct: 241 SLNVAAAAAVCLFEQLRQR 259 >F1W2S2.1 F1W2S2_9BURK RNA methyltransferase Length = 262 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/259 (70%), Positives = 209/259 (80%) Query: 1 MKTISSRDNPLYKELKQLATSAQARRKAGRSLLDGVHLAQAYLQGAGKPAFCIVAESALH 60 MK ISSRDNPLYKELKQLATS+QARRKAGR+LLDGVHL +AYLQ G P C+V++SA Sbjct: 1 MKPISSRDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATI 60 Query: 61 HAEVAPVLAQCEAAGSQCICLTDALYQAASQVENGVGLLLVIATPQPSAPTALTTSAVLL 120 + EV P+L QCEA +QCI L DALYQA SQVE+GVGL+ V+ TPQ P AL SAVLL Sbjct: 61 NQEVVPLLLQCEAGRTQCIVLPDALYQAISQVEHGVGLMFVVETPQLVMPVALAGSAVLL 120 Query: 121 DGLQDPGNLGSILRSAAAAGIGQVFCSAGTAAAWSPKVLRAGMGAHFQLEIFENADLLSL 180 D LQDPGN+GSILRSAAAAGI VFCS GTA AWSPKVLRAGMGAHF L+IFEN DL + Sbjct: 121 DNLQDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGAHFLLKIFENVDLAEV 180 Query: 181 CKGSAIPVLATSSYAQKNIYQTDLTQAVAWLFGHEGQGVADDLLDAASDKVVIPHLGEME 240 + +++PVLATSS+ + +Y DLTQ VAWLFGHEGQGV + LL A+ +V IPH+G ME Sbjct: 181 VRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIGAME 240 Query: 241 SLNVAAAAAVCFFEQVRQK 259 SLNVAA AAVCFFEQVRQ+ Sbjct: 241 SLNVAACAAVCFFEQVRQR 259 >A6SZN6.1 A6SZN6_JANMA RNA methyltransferase, TrmH family Length = 264 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 175/259 (67%), Positives = 207/259 (79%) Query: 1 MKTISSRDNPLYKELKQLATSAQARRKAGRSLLDGVHLAQAYLQGAGKPAFCIVAESALH 60 +K+ISSRDNPLYKELK LA S+QARRKAGR+LLDGVHL +AYLQ G P CIV E+A+ Sbjct: 3 IKSISSRDNPLYKELKHLAASSQARRKAGRTLLDGVHLCEAYLQKVGLPPLCIVGETAML 62 Query: 61 HAEVAPVLAQCEAAGSQCICLTDALYQAASQVENGVGLLLVIATPQPSAPTALTTSAVLL 120 + EV ++ QC + +QCI L DAL+ A SQVE+GV LL VI TP+ P LT SAVLL Sbjct: 63 NGEVTVIVQQCSDSTTQCIVLPDALFHALSQVEHGVDLLFVIDTPEMPTPPRLTQSAVLL 122 Query: 121 DGLQDPGNLGSILRSAAAAGIGQVFCSAGTAAAWSPKVLRAGMGAHFQLEIFENADLLSL 180 D +QDPGN GSI+RSAAAAGI QVFCSAGT AWSPKVLRAGMGAHF LEIFE DL L Sbjct: 123 DKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEIFEGVDLSDL 182 Query: 181 CKGSAIPVLATSSYAQKNIYQTDLTQAVAWLFGHEGQGVADDLLDAASDKVVIPHLGEME 240 + IPV+ATSS+A+K +Y+ DL Q VAWLFGHEGQGVADDLL A+ ++ IPHLG++E Sbjct: 183 LGRADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARATHRISIPHLGDIE 242 Query: 241 SLNVAAAAAVCFFEQVRQK 259 SLNVAA++AVCFFEQ+RQ+ Sbjct: 243 SLNVAASSAVCFFEQLRQR 261 >A4G4T6.1 A4G4T6_HERAR tRNA/rRNA methyltransferase SpoU-like Length = 265 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 171/257 (66%), Positives = 205/257 (79%) Query: 2 KTISSRDNPLYKELKQLATSAQARRKAGRSLLDGVHLAQAYLQGAGKPAFCIVAESALHH 61 K ISSRDNPLYKELK LATS+QARRKAGR+LLDG+HL +AYLQ G P CI +E+AL + Sbjct: 4 KIISSRDNPLYKELKHLATSSQARRKAGRTLLDGIHLCEAYLQQVGLPPLCIASETALLN 63 Query: 62 AEVAPVLAQCEAAGSQCICLTDALYQAASQVENGVGLLLVIATPQPSAPTALTTSAVLLD 121 +EV ++ QC + +QCI L DAL+ A SQVE+GV +L VI TP+ + P L SAVLLD Sbjct: 64 SEVTVIVQQCIHSHTQCIVLPDALFHALSQVEHGVDILFVIDTPELTEPQRLLQSAVLLD 123 Query: 122 GLQDPGNLGSILRSAAAAGIGQVFCSAGTAAAWSPKVLRAGMGAHFQLEIFENADLLSLC 181 +QDPGN GSI+RSAAAAGI QVFCSAGT AWSPKV+RAGMGAHF +EIFEN DL +L Sbjct: 124 RVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHFLMEIFENVDLEALI 183 Query: 182 KGSAIPVLATSSYAQKNIYQTDLTQAVAWLFGHEGQGVADDLLDAASDKVVIPHLGEMES 241 + IPV+ATSS+A+K +Y DLTQ VAWLFGHEGQGV + LL A+ ++ IPHLG +ES Sbjct: 184 ARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAIES 243 Query: 242 LNVAAAAAVCFFEQVRQ 258 LNVAA++AVCFFEQVRQ Sbjct: 244 LNVAASSAVCFFEQVRQ 260 >C3XAS1.1 C3XAS1_OXAFO RNA methyltransferase Length = 260 Score = 338 bits (867), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 157/258 (60%), Positives = 200/258 (77%) Query: 1 MKTISSRDNPLYKELKQLATSAQARRKAGRSLLDGVHLAQAYLQGAGKPAFCIVAESALH 60 MK+++S+DNP Y+ELKQLA+S+ ARRK+G+S+LDG+HL Q+YL+ P C+V+E++ H Sbjct: 1 MKSLTSKDNPQYRELKQLASSSAARRKSGQSVLDGIHLCQSYLEHIDVPLLCVVSEASQH 60 Query: 61 HAEVAPVLAQCEAAGSQCICLTDALYQAASQVENGVGLLLVIATPQPSAPTALTTSAVLL 120 H EVA ++ +CE G +C+ LTD+L+ SQVENG+ +L +I TP LT + VLL Sbjct: 61 HPEVAAIMGECERRGGECLLLTDSLFHPLSQVENGIDILFLIVTPVHEDCPELTQTGVLL 120 Query: 121 DGLQDPGNLGSILRSAAAAGIGQVFCSAGTAAAWSPKVLRAGMGAHFQLEIFENADLLSL 180 D +QDPGNLGSILRSAAAAGI QVFCS GTAA WSP+VLRAGMGAHF LE+FE+ L L Sbjct: 121 DRIQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFLLEVFEDVSLEKL 180 Query: 181 CKGSAIPVLATSSYAQKNIYQTDLTQAVAWLFGHEGQGVADDLLDAASDKVVIPHLGEME 240 + + IPV+AT+ Y +K IY DL + VAWL GHEG+GV + L+ ASDK+VIPH+G ME Sbjct: 181 IETAKIPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDERLMVMASDKLVIPHMGAME 240 Query: 241 SLNVAAAAAVCFFEQVRQ 258 SLNVAA AAVCFFEQVRQ Sbjct: 241 SLNVAACAAVCFFEQVRQ 258