BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0012.p         (169 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3RCE8.1 B3RCE8_CUPTR Putative Cytochrome c, class I                  251   2e-65
Q0JZ21.1 Q0JZ21_CUPNH Cytochrome c-type                               249   1e-64
A5EL65.1 A5EL65_BRASB Putative cytochrome c region protein            220   4e-56
A8IC62.1 A8IC62_AZOC5 Putative sulfite oxidase cytochrome subunit     214   3e-54
B2JUQ8.1 B2JUQ8_BURP8 Cytochrome c class I                            211   4e-53

>B3RCE8.1 B3RCE8_CUPTR Putative Cytochrome c, class I
          Length = 183

 Score =  251 bits (642), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/164 (71%), Positives = 134/164 (81%), Gaps = 4/164 (2%)

Query: 2   YGIGHAASERDLAAWNIEVATDGVGLPAGSGSVTNGKAIYAQQCAACHGAKGEGKPADQL 61
           YGIG  ASERDLAAWNI+V  DG GLP GSG+V  G+ +YAQ CAACHG  GEGKPAD L
Sbjct: 16  YGIGRPASERDLAAWNIDVTPDGTGLPPGSGTVARGQQVYAQHCAACHGVNGEGKPADAL 75

Query: 62  VGGKGTLTSA----NPVKTIGSFWPYATTVFDFINRAMPYNAPQSLTPDEVYSVTAYLLY 117
           VGG+GTL  A    +PVKTIGSFWPYATTVFDFINRAMPYNAPQSL PDEVY+VTA+LL+
Sbjct: 76  VGGQGTLKDAARGKDPVKTIGSFWPYATTVFDFINRAMPYNAPQSLAPDEVYAVTAWLLH 135

Query: 118 LNGVVTADTVLDAHSLPRVRMPNRDGFIGDTRPDTTNVACQKNC 161
            NG++ AD VLDA +LP+V+MPNRDGF+ D RPDT NV C+  C
Sbjct: 136 KNGILPADAVLDARTLPQVKMPNRDGFVADARPDTANVPCRSAC 179


>Q0JZ21.1 Q0JZ21_CUPNH Cytochrome c-type
          Length = 195

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 133/164 (81%), Gaps = 4/164 (2%)

Query: 2   YGIGHAASERDLAAWNIEVATDGVGLPAGSGSVTNGKAIYAQQCAACHGAKGEGKPADQL 61
           YGIG  ASE DLAAWNI+V  DG GLP GSG+V  G+ +YAQ CAACHG  GEGKPAD L
Sbjct: 28  YGIGRPASELDLAAWNIDVTPDGTGLPPGSGTVARGQQVYAQHCAACHGVNGEGKPADAL 87

Query: 62  VGGKGTLTSA----NPVKTIGSFWPYATTVFDFINRAMPYNAPQSLTPDEVYSVTAYLLY 117
           VGG+GTL  A    +PVKTIGSFWPYATTVFDFINRAMPYNAPQSL PDEVY+VTA+LL+
Sbjct: 88  VGGQGTLKDAARGKDPVKTIGSFWPYATTVFDFINRAMPYNAPQSLAPDEVYAVTAWLLH 147

Query: 118 LNGVVTADTVLDAHSLPRVRMPNRDGFIGDTRPDTTNVACQKNC 161
            NG++ AD VLDA +LP+V+MPNRDGF+ D RPDT NV C+  C
Sbjct: 148 KNGILPADAVLDARTLPQVKMPNRDGFVADARPDTANVPCRSAC 191


>A5EL65.1 A5EL65_BRASB Putative cytochrome c region protein
          Length = 179

 Score =  220 bits (561), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 123/148 (83%)

Query: 4   IGHAASERDLAAWNIEVATDGVGLPAGSGSVTNGKAIYAQQCAACHGAKGEGKPADQLVG 63
           +G A +  ++AAWNI+V+ DG GLPAG GSV  G+A++A+ CAACHG KG+G  AD LVG
Sbjct: 28  LGRAVTADEIAAWNIDVSGDGAGLPAGRGSVAEGRALFAEACAACHGDKGQGGAADALVG 87

Query: 64  GKGTLTSANPVKTIGSFWPYATTVFDFINRAMPYNAPQSLTPDEVYSVTAYLLYLNGVVT 123
           G+GTL +A PVKTIGSFWPYA TVFD++NRAMP+NAPQSLTPD+VY+VTAYLL+LNG+V+
Sbjct: 88  GRGTLATAKPVKTIGSFWPYAPTVFDYVNRAMPFNAPQSLTPDQVYAVTAYLLFLNGIVS 147

Query: 124 ADTVLDAHSLPRVRMPNRDGFIGDTRPD 151
            DT LDA SL +V MPNR+GF  D RPD
Sbjct: 148 EDTTLDAASLAKVEMPNRNGFTRDPRPD 175


>A8IC62.1 A8IC62_AZOC5 Putative sulfite oxidase cytochrome subunit
          Length = 184

 Score =  214 bits (545), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 121/154 (78%)

Query: 3   GIGHAASERDLAAWNIEVATDGVGLPAGSGSVTNGKAIYAQQCAACHGAKGEGKPADQLV 62
           GIGH A++ ++A W+I+V  DG GLP G GSV  G+ I+AQ C+ACHG KG+G  AD L 
Sbjct: 29  GIGHPATQAEIALWDIDVRADGTGLPPGRGSVAQGREIFAQTCSACHGEKGQGAEADALA 88

Query: 63  GGKGTLTSANPVKTIGSFWPYATTVFDFINRAMPYNAPQSLTPDEVYSVTAYLLYLNGVV 122
           GGKGTL +A PVKT+GSFWPYA T+FD++NRAMP+ APQSL+P+EVY+V+AY+L+LNG+V
Sbjct: 89  GGKGTLATAKPVKTVGSFWPYAATLFDYVNRAMPFTAPQSLSPNEVYAVSAYVLFLNGLV 148

Query: 123 TADTVLDAHSLPRVRMPNRDGFIGDTRPDTTNVA 156
             D  LDA SLP+V MPNR+GF  D RPD   VA
Sbjct: 149 PEDASLDAKSLPKVAMPNRNGFTSDPRPDIPPVA 182


>B2JUQ8.1 B2JUQ8_BURP8 Cytochrome c class I
          Length = 200

 Score =  211 bits (536), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 117/147 (79%)

Query: 4   IGHAASERDLAAWNIEVATDGVGLPAGSGSVTNGKAIYAQQCAACHGAKGEGKPADQLVG 63
           IG    + DLAAWNI+VA DG GLPAGSG V  G  I++ +CAACHGAKGEG   DQLVG
Sbjct: 51  IGTPIRDADLAAWNIDVAPDGRGLPAGSGDVAMGGKIFSAKCAACHGAKGEGSIGDQLVG 110

Query: 64  GKGTLTSANPVKTIGSFWPYATTVFDFINRAMPYNAPQSLTPDEVYSVTAYLLYLNGVVT 123
           G+GTL SANP +T+GS+WPYATT+FD+I RAMPYNAPQSL+ DEVY+V+A++L  NG+V 
Sbjct: 111 GRGTLASANPKRTVGSYWPYATTLFDYIRRAMPYNAPQSLSADEVYAVSAWILNQNGIVP 170

Query: 124 ADTVLDAHSLPRVRMPNRDGFIGDTRP 150
            D  LDAHSL  +RMPNRDGFI D RP
Sbjct: 171 DDARLDAHSLASIRMPNRDGFIPDPRP 197