BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0256.p         (65 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1579 [J] COG0291 Ribosomal protein L35 Rso Ralstonia solanace...    88   6e-18
NMB0722 [J] COG0291 Ribosomal protein L35 Nme Neisseria meningit...    87   1e-17
NMA0931 [J] COG0291 Ribosomal protein L35 NmA Neisseria meningit...    87   1e-17
PA2742 [J] COG0291 Ribosomal protein L35 Pae Pseudomonas aeruginosa    67   7e-12
XF0739 [J] COG0291 Ribosomal protein L35 Xfa Xylella fastidiosa ...    62   4e-10

>RSc1579 [J] COG0291 Ribosomal protein L35 Rso Ralstonia solanacearum
          Length = 65

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 49/65 (75%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTK SA KRF  RPGGTIK G AFKRHILTKKTTK KRQLRG   V+  ++ SV  
Sbjct: 1  MPKMKTKKSASKRFTARPGGTIKRGQAFKRHILTKKTTKNKRQLRGTEGVHETNLKSVRA 60

Query: 61 MMPNA 65
          MMP A
Sbjct: 61 MMPYA 65


>NMB0722 [J] COG0291 Ribosomal protein L35 Nme Neisseria meningitidis MC58
          Length = 65

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRF+V   G +K  HAFKRHILTKKTTK KRQLRG + VN  D+ SV +
Sbjct: 1  MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMVNDRDLASVAK 60

Query: 61 MMPNA 65
          M+P A
Sbjct: 61 MLPYA 65


>NMA0931 [J] COG0291 Ribosomal protein L35 NmA Neisseria meningitidis
          Z2491
          Length = 65

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKSSAKKRF+V   G +K  HAFKRHILTKKTTK KRQLRG + VN  D+ SV +
Sbjct: 1  MPKMKTKSSAKKRFKVLGNGGVKRAHAFKRHILTKKTTKNKRQLRGTSMVNDRDLASVAK 60

Query: 61 MMPNA 65
          M+P A
Sbjct: 61 MLPYA 65


>PA2742 [J] COG0291 Ribosomal protein L35 Pae Pseudomonas aeruginosa
          Length = 64

 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPKMKTKS A KRF+   GG +K  HAFK HILTK TTK KRQLRG + +N +DV  V R
Sbjct: 1  MPKMKTKSGAAKRFKKTAGG-LKHKHAFKSHILTKMTTKRKRQLRGTSMLNKSDVARVER 59

Query: 61 MM 62
           +
Sbjct: 60 SL 61


>XF0739 [J] COG0291 Ribosomal protein L35 Xfa Xylella fastidiosa 9a5c
          Length = 65

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 39/63 (61%)

Query: 1  MPKMKTKSSAKKRFRVRPGGTIKCGHAFKRHILTKKTTKVKRQLRGITNVNAADVVSVMR 60
          MPK+KT  +A KRFR    G  K GHA + HILTKK TK KR LR   +V A D   + R
Sbjct: 1  MPKIKTNRAAAKRFRKTASGKYKAGHANRSHILTKKATKRKRNLRQQNHVRAEDAGRLDR 60

Query: 61 MMP 63
          M+P
Sbjct: 61 MLP 63