BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0222.p         (186 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1569 [K] COG2771 DNA-binding HTH domain-containing proteins R...   221   7e-58

>RSc1569 [K] COG2771 DNA-binding HTH domain-containing proteins Rso
           Ralstonia solanacearum
          Length = 181

 Score =  221 bits (563), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 136/177 (76%)

Query: 6   SVDFEQVFMHAPIGMCVSHNRVIQQSNLALAKMFGYAPGELSGQSFMVLYPTADEFERTG 65
           ++D++  F  AP+GM +S  RV+   N   A++FG+    + GQSF +LYPT DE+ERTG
Sbjct: 3   ALDYQTAFQLAPVGMVMSRERVMVDVNEEAARIFGHPRTAMIGQSFELLYPTHDEYERTG 62

Query: 66  VRLVPILNEKGFYSDERIMKRASDEMFWCHVTGASLVQGDPHAAGIWTFEDVSAKRPLAP 125
            R+VPI+N +G YSDERIMKRA+ E+FWCHVTG +L +  P   GIWTFED+SA RP+  
Sbjct: 63  ARIVPIMNARGSYSDERIMKRANGELFWCHVTGRALDRTRPLGEGIWTFEDLSAHRPVTA 122

Query: 126 GLTPREREIAALLVEGKTSKLIARQVELSPRTVEMHRARLMRKFGAATSSELVHKLL 182
            LTPRER+IAA LVEGKTSK I +Q+++SPRTVE++RARLM+K+ A+TS ELV +L+
Sbjct: 123 ALTPRERDIAAQLVEGKTSKQIGKQLDISPRTVEIYRARLMKKYAASTSLELVQRLM 179