BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0182.p (238 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport... 130 3e-30 RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport... 125 7e-29 RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport... 124 2e-28 DR1038 [E] COG0683 ABC-type branched-chain amino acid transport ... 84 3e-16 FN1432 [E] COG0683 ABC-type branched-chain amino acid transport ... 67 3e-11 >RSc2441 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 336 Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 1/230 (0%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 ++ Q P LA+Y L A + A++D+ T G F++ +A VV+ ++ Sbjct: 103 VVATDAQQGPALANYAAKTLGAKSVAIVDDATAYGKGLADEFEKTAKADGVNVVAREATN 162 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLR 120 +++DF IL + K+PDVI +GG+ + + +G+ V G +G Sbjct: 163 DKATDFKAILTKIKGKKPDVIMYGGMDATGGPFAKQAKELGITAKIVGG-DGVCTDKVAE 221 Query: 121 DAGAAADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDA 180 AG A D ++ G+ KM +FEK+Y RF + YAP TYDAV V+V A++ + Sbjct: 222 LAGDAIDNIICSEAGLALSKMEKGADFEKKYEDRFKTPVQIYAPFTYDAVMVVVDAMKRS 281 Query: 181 DSFLPARILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKDMHWLPL 230 +S PA+ILAA+ Y G+ G I+FD G+L T+Y KD L Sbjct: 282 NSVDPAKILAAMPTTNYHGVIGNIAFDDKGDLKEGSITLYNYKDKKKTVL 331 >RSc3300 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 377 Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 1 MIGHSGQGAPLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQ 60 M+ Q ++ + V L N A++D+ T G F++ +A +V + Sbjct: 141 MMTSDTQQGSVVGTFAVKKLGYKNLAIVDDRTAYGQGLADEFEKAAKAAGATIVRREYTN 200 Query: 61 FRSSDFNTILEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHG-MNGTNGLNFL 119 ++SDF IL + K PD +F+GG Q+A LV+ +R +G++ T + G M+ T+ +F+ Sbjct: 201 DKASDFKAILTQIKSKNPDAVFYGGAEGQSAPLVKQMRELGMKATLMSGEMSKTD--DFI 258 Query: 120 RDAGA-AADGVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVR 178 + AGA AA+GV+ G+P ++MPG +++ Y +RFG + Y+P YD L+ A+ Sbjct: 259 KLAGAPAAEGVVCSLAGLPLEQMPGGAGYKQRYEKRFGSTVQTYSPYAYDGAMALMKAMV 318 Query: 179 DADSFLPARILAALYKVRYSGLTGT-ISFDRNGNLLNPIFTIYQMKDMHWLPLQT 232 A S P++ L L G+T ++D G+L + T+Y++ W+PL++ Sbjct: 319 AAGSSDPSKYLPILAATNAQGVTAKHYAYDDKGDLKDGGITVYKVTGGKWVPLES 373 >RSp1592 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 380 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 114/217 (52%), Gaps = 8/217 (3%) Query: 12 LADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTILE 71 L+ + V L+A A+ID+ T G F++ + VVS +++DF IL Sbjct: 159 LSRFAVTTLNAKKVAIIDDRTAYGQGAAEVFEKGVKGLGASVVSQQFTSDKATDFMAILT 218 Query: 72 ATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLN---FLRDAGAAADG 128 + + RPDVIF+GG+ Q + R ++++G+ + GT+GL + + A +G Sbjct: 219 SIKRTRPDVIFYGGMDAQGGLIARQMKQLGIGAKLL----GTDGLCTGAVAKISAGAVNG 274 Query: 129 VL-AINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPAR 187 L G D MP +F + Y RFG + +YAP YD++ V+ AA++ ADS P R Sbjct: 275 TLYCTRGGKALDMMPNGSDFARRYKARFGTEVLNYAPYLYDSLMVIAAAMQAADSVEPPR 334 Query: 188 ILAALYKVRYSGLTGTISFDRNGNLLNPIFTIYQMKD 224 L AL K+ G TG ++FD GNL P FT++ +D Sbjct: 335 YLPALAKISLDGTTGPVAFDEKGNLKTPGFTVFTYQD 371 >DR1038 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Dra Deinococcus radiodurans Length = 393 Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 13/212 (6%) Query: 10 PLLADYLVDNLHALNAAVIDNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTI 69 P AD++V L VI++ T G ++R +A+ ++V S+ + DF I Sbjct: 158 PAGADFMVSTLKVKKVYVINDKTPYGEGLSGEAEKRLKAKGVQIVQSEGVAAEERDFTAI 217 Query: 70 LEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAGA-AADG 128 + + +PD I+FGGL Q + +R G+Q + G +G + + AGA A+ Sbjct: 218 ITKIQTLKPDAIYFGGLYGQIGPFAQQLRAKGVQVPLIGG-DGMDSDELAKLAGAQGANN 276 Query: 129 VLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDA----DSFL 184 + P D +P K + + FG ++ Y + YD+ +V++ + DA + Sbjct: 277 IYFTTVAPPLDSVPAAKTMAGNFKKAFGSDVQGYGIMGYDSAKVVLQGILDAAKKNGNKA 336 Query: 185 PARILAALYKVRYSG-----LTGTISFDRNGN 211 P+R A + SG LTGT+ FD+NG+ Sbjct: 337 PSR--AQVETAIRSGTFGNLLTGTVQFDKNGD 366 >FN1432 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Fnu Fusobacterium nucleatum Length = 383 Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 4/212 (1%) Query: 11 LLADYLVDNLHALNAAVI-DNGTRAGNMFGVAFKERFQARKGKVVSSDSIQFRSSDFNTI 69 +LA + D L A A++ +N + + AF + + +VV+ + DF Sbjct: 158 VLAKFAKDKLGAKTVAIMSNNSSDYSDGVANAFVTEAEKQGIQVVAREGYSDGDKDFKAQ 217 Query: 70 LEATRLKRPDVIFFGGLADQAAALVRNVRRVGLQTTFVHGMNGTNGLNFLRDAG--AAAD 127 L + PD++F +Q + R VGL++ V G +G +G+ D AA + Sbjct: 218 LTKIAQQNPDILFIPDYYEQDGLIAIQAREVGLKSVIV-GSDGWDGVVKTVDPSSYAAIE 276 Query: 128 GVLAINPGMPTDKMPGWKNFEKEYLQRFGGNINDYAPITYDAVQVLVAAVRDADSFLPAR 187 V N D +NF K Y +++ + ++ ++YD +L AA+ A + Sbjct: 277 DVYFANHYSTKDSNEKIQNFIKNYKEKYNDEPSAFSALSYDTAYLLKAAIEKAGTTDKEA 336 Query: 188 ILAALYKVRYSGLTGTISFDRNGNLLNPIFTI 219 + A+ ++++ G+TG ++FD N N + I I Sbjct: 337 VTKAIKEIQFEGITGQLTFDENNNPVKSITII 368