BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0167.p         (224 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0069 [S] COG1652 Uncharacterized protein containing LysM doma...    79   7e-15
PA0020 [S] COG1652 Uncharacterized protein containing LysM domai...    77   2e-14

>RSc0069 [S] COG1652 Uncharacterized protein containing LysM domain Rso
           Ralstonia solanacearum
          Length = 390

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 14/228 (6%)

Query: 3   PLLIDTVQLAQAPRIVATPDRRALMGKGDRIVVEGDLHGVAE-----FRIVRPSLKLRDP 57
           P+++D   LA   RI   P+ R  MGKG+     G   G A      ++  RP   L+DP
Sbjct: 166 PIVVDEATLATPARIFELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDP 225

Query: 58  LSGEHLGDEVIPLGKTVLRREGAG--GAHSFIITSSTQEITPGDLLIRDAA--PVANSIA 113
           ++G  LG E   LG   + R   G        + SS +E+  G  L+   A  PV  S  
Sbjct: 226 VTGTVLGYEADFLGTLRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPH 285

Query: 114 IRSGATVDARIISIAGGVVHAAQNQVVGINKGGRDNVAAGMSLALY-ATPEPHRAAAKNA 172
              G  +   +  + GGV     +QVV +N G  + +  G  LAL  A    +   A N 
Sbjct: 286 APEG-EIRGAVAKVTGGVQFGGSDQVVVLNIGSANGLEPGHVLALSRAGKVVNDTTAGNE 344

Query: 173 QQQASGPPEHESGRLLIFRVYDRVSYGLITGSVEALQVGDKALAPSTE 220
             Q    PE   G   +FRV+  V+Y L+T +   ++VGD A++P+T+
Sbjct: 345 PVQL---PEERYGLAFVFRVFQHVAYALVTDASNTVEVGDAAISPTTQ 389


>PA0020 [S] COG1652 Uncharacterized protein containing LysM domain Pae
           Pseudomonas aeruginosa
          Length = 341

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 91/215 (42%), Gaps = 9/215 (4%)

Query: 7   DTVQLAQAPRIVATPDRRALMGKGDRIVVEGDL-HGVAEFRIVRPSLKLRDPLSGEHLGD 65
           D      AP IVA    R + G GDRI   G    G   + I R      DP + E LG 
Sbjct: 132 DEKTFTSAPYIVAGNAERIVSGTGDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGI 191

Query: 66  EVIPLGK-TVLRREGAGGAHSFIITSSTQEITPGDLLIRDAAPVANSIAI--RSGATVDA 122
               +G   V+  EG     +  +T +TQE+  GD L        NS  +       V  
Sbjct: 192 NADDIGGGEVVATEG--DVATLALTRTTQEVRLGDRLFPTEERAVNSTFMPGEPSREVKG 249

Query: 123 RIISIAGGVVHAAQNQVVGINKGGRDNVAAGMSLALYATPEPHRAAAKNAQQQASGPPEH 182
            II +  GV    Q  VV +N+G RD +A G  LA+Y   E  R        +    P+ 
Sbjct: 250 EIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKI---PDE 306

Query: 183 ESGRLLIFRVYDRVSYGLITGSVEALQVGDKALAP 217
            +G L++FR Y ++SY L+  +   L V D+   P
Sbjct: 307 RAGLLMVFRTYKKLSYALVLMASRPLSVTDRVQNP 341