BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0138.p         (108 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr3528 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...   114   8e-26
AGpA814 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...   108   4e-24
SMb20004 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    96   2e-20
SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    93   2e-19
SMb20211 [K] COG0583 Transcriptional regulator Sme Sinorhizobium...    92   2e-19

>mlr3528 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 300

 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 74/105 (70%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           +L DV E E  AAG + A  G L +TA  +FGR++V P+V  +L  YP+ ++    ADRI
Sbjct: 72  ILDDVGEAERAAAGEYSAPTGELAITAPVVFGRLHVLPVVTGFLSAYPDVDIRLTLADRI 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHG 105
             L+++  D+A+RIGQL DSS  AI VG++RRVVCASP+YLAEHG
Sbjct: 132 TQLVEDHFDLALRIGQLPDSSLVAIGVGSIRRVVCASPAYLAEHG 176


>AGpA814 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 324

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 4   DVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRIINL 63
           DV+E E   +GAHGA+RG L +TA   FG  +V PI LE+LR + E ++    ADR I+L
Sbjct: 103 DVAEEE--VSGAHGALRGGLHMTAPIAFGERHVLPIALEFLREHQEIDLRLTLADRQISL 160

Query: 64  MDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAPL 108
            DE +DVA+RIG LADS+  A  VG VRRVVCASP YLA  G PL
Sbjct: 161 ADEHVDVALRIGHLADSALIATRVGAVRRVVCASPDYLACRGVPL 205


>SMb20004 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 301

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 63/94 (67%)

Query: 14  GAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRIINLMDEGIDVAIR 73
           G+  A  G L VTA A+FGR++V P++L++L  YP  +V+  F DR+ NL+DEG+DVAIR
Sbjct: 85  GSFTAPAGLLTVTAPALFGRIHVLPVILDFLDHYPAMQVKTIFVDRVTNLVDEGLDVAIR 144

Query: 74  IGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
           I  L  S   A  +G+VR+V+C SP Y A  G P
Sbjct: 145 IASLPASGLVARRIGSVRQVLCGSPDYFARFGDP 178


>SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 298

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 70/107 (65%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           +LA + E E  A+G    V+G L ++A   FGRM++ P +  +++ +P+ ++     D  
Sbjct: 72  ILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPDLKLHIVLTDDF 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPVGTVRRVVCASPSYLAEHGAP 107
            +++ EG D+AIRIG+L+DSS  A  +  VRR++CA+PSY+A HGAP
Sbjct: 132 TDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSYVARHGAP 178


>SMb20211 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti
          Length = 310

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 1   VLADVSEMEDLAAGAHGAVRGRLVVTASAMFGRMYVTPIVLEYLRRYPEAEVECRFADRI 60
           VL D+ E + LA G   A RG L +++  + G   + PI+ ++L  YP   V     DR 
Sbjct: 72  VLTDLEEADMLAGGERSAPRGMLTISSPPILGEEILRPILDDFLDLYPTVSVRLLLLDRF 131

Query: 61  INLMDEGIDVAIRIGQLADSSYQAIPV-GTVRRVVCASPSYLAEH 104
           +NL+DEG+D+A+RIGQLADSS  +  + G VRRVV ASP YLA H
Sbjct: 132 VNLVDEGVDIALRIGQLADSSLISTRLGGDVRRVVVASPRYLANH 176