BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0136.p (425 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20006 [R] COG3576 Predicted flavin-nucleotide-binding protein... 291 2e-78 PA3036 [R] COG3576 Predicted flavin-nucleotide-binding protein s... 198 2e-50 all2799 [R] COG3576 Predicted flavin-nucleotide-binding protein ... 179 8e-45 mll3525 [R] COG3576 Predicted flavin-nucleotide-binding protein ... 60 7e-09 >SMb20006 [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase Sme Sinorhizobium meliloti Length = 317 Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 156/285 (54%), Positives = 198/285 (69%), Gaps = 6/285 (2%) Query: 1 MQRSVGVVERMAGPGRNQMSRTRMPDQHREFYAQLPFVILGAVDTEGEVWATLRAGRPGF 60 +Q+ +GV RM GR M R + DQHREFY LP V+LG+VD +G+ WATLRAG PGF Sbjct: 30 LQKRLGVETRMDEVGRRVM-RDHLIDQHREFYPLLPMVVLGSVDRDGDAWATLRAGEPGF 88 Query: 61 MHADVAKKLTLELVRDPLDPADAGMEDGDGIGMLGIELHTRRRNRMNGLVSRQSGERFHI 120 +HA K+LT+EL R+P DPA+AGMEDG + +LGI+L TRRRNR+NG + R +G F + Sbjct: 89 LHAPDQKRLTVELPREPTDPAEAGMEDGAPLALLGIDLGTRRRNRLNGTLKRHAGG-FDL 147 Query: 121 DVTQAYGNCPQYIRLRQYEF----TDAPAGPVSKLAALDADAAAMIRAADSFYVASYVVR 176 V Q++GNCP+YI+LRQ F ++ PA P LDA A A++ AD+F+VA+Y Sbjct: 148 GVDQSFGNCPKYIQLRQVRFVRDPSEPPAAPPVSSFGLDAAARALVAQADTFFVATYADL 207 Query: 177 DGKKQVDASHRGGKPGFVRIDDDGVLTIPDFSGNLFFNTLGNFLLNPRAGLVFVDFRNGD 236 G +Q+D SHRGG GFVR DG LTIPDF GN FFNTLGN +NPRAGL F DF G Sbjct: 208 AGGRQLDVSHRGGPAGFVRAGGDGWLTIPDFVGNRFFNTLGNIAVNPRAGLTFPDFSTGG 267 Query: 237 LLQLSGRAEVILDAPEVAAFVGAERMWRFTPQQIVRRPAALPLRW 281 LLQ+SG AE++ +AP GAER WRF P++IV R ALP+R+ Sbjct: 268 LLQMSGEAELLSEAPNGVPPDGAERYWRFRPRRIVWRADALPIRY 312 >PA3036 [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase Pae Pseudomonas aeruginosa Length = 310 Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 3/281 (1%) Query: 1 MQRSVGVVERMAGPGRNQMSRTRMPDQHREFYAQLPFVILGAVDTEGEVWATLRAGRPGF 60 +Q GV E++AG G + RT MPDQHREF+A L +++G++D +G A++ G PGF Sbjct: 15 IQERAGVREQVAGFGSRAI-RTFMPDQHREFFALLSLLLVGSLDADGYPSASVLWGPPGF 73 Query: 61 MHADVAKKLTLELVRDPLDPADAGMEDGDGIGMLGIELHTRRRNRMNGLVSRQSGERFHI 120 + +L ++ + DP A +E G +G+LG+E TRRRNRMNG V + G+ F + Sbjct: 74 ARSPEPTRLRIDNLPQADDPLAANLEAGTRLGILGLEWPTRRRNRMNGRVLARDGKGFTV 133 Query: 121 DVTQAYGNCPQYIRLRQYEFTDAPAGPVSKLAALDADAAAMIRAADSFYVASYVVRDGKK 180 V Q++GNCP+YI+ R ++ A P + LD +++ +D+ ++AS + Sbjct: 134 GVEQSFGNCPKYIQARSHQPVSRIASPALQGEGLDPRWLSLVSCSDTLFIASQHADPLRG 193 Query: 181 QVDASHRGGKPGFVRIDDDGVLTIPDFSGNLFFNTLGNFLLNPRAGLVFVDFRNGDLLQL 240 VD SHRGG PGF+R+ DG L +PD++GN FNTLGN L +PR GL+F+DF NGDLL L Sbjct: 194 GVDVSHRGGPPGFLRLGADGRLWLPDYAGNRLFNTLGNLLQDPRCGLLFIDFDNGDLLHL 253 Query: 241 SGRAEVILDA--PEVAAFVGAERMWRFTPQQIVRRPAALPL 279 AE+ P + GAER+ P R LPL Sbjct: 254 HAEAELFWPGSQPSIPWPAGAERLLALRPAGWRWRRGRLPL 294 >all2799 [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase Nos Nostoc sp. PCC 7120 Length = 299 Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 7/256 (2%) Query: 29 REFYAQLPFVILGAVDTEGEVWATLRAGRPGFMHADVAKKLTLELVRDPLDPADAGMEDG 88 EF + VDTEG VWA+L PGF+ + + + + DP ++ Sbjct: 37 EEFLHTQQLAVASTVDTEGRVWASLLTENPGFVEVLNTQTIQINTIPIQTDPLHQNLKVN 96 Query: 89 DGIGMLGIELHTRRRNRMNGLVSRQSGERFHIDVTQAYGNCPQYIRLRQYE--FTDAPAG 146 + IG+L I+L RRR R+NG + + + +++ Q + NCP+YI++R E DA Sbjct: 97 NDIGLLVIDLANRRRLRLNG-KAEVNQKHIKVEIQQVFFNCPKYIQIRHIEKAVIDAIEQ 155 Query: 147 PVSKLAALDADAAAM-IRAADSFYVASYVVRDGKKQVDASHRGGKPGFVRIDDDGVLTIP 205 P + +D + I AD+F++ASY G DASHRGG PGF+++ + L P Sbjct: 156 PEAFTRDSLSDTNQLWITQADTFFIASYHPESG---ADASHRGGFPGFIQVVNSNQLVFP 212 Query: 206 DFSGNLFFNTLGNFLLNPRAGLVFVDFRNGDLLQLSGRAEVILDAPEVAAFVGAERMWRF 265 D+SGN F T GN +NP+AGL+F+DF G LQ++G+A+VI D + F GA+R+ F Sbjct: 213 DYSGNNMFQTFGNLNVNPKAGLLFIDFEKGHTLQITGKAQVIWDVARLTEFAGAQRLVEF 272 Query: 266 TPQQIVRRPAALPLRW 281 +Q++ A LRW Sbjct: 273 AIEQVLESCNATSLRW 288 >mll3525 [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase Mlo Mesorhizobium loti Length = 210 Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 11/128 (8%) Query: 152 AALDADAAAMIRAADSFYVASYVVRDGKKQVDASHRGGKPGFVRIDDDGVLTIPDFSGNL 211 A + D AA I S ++++ +G Q HRGG GF+++ D+ + DFSGN Sbjct: 40 AVVTPDLAAFIAMQTSVFLST---ANGDGQPYIQHRGGPAGFLKVLDEKTIGFADFSGNR 96 Query: 212 FFNTLGNFLLNPRAGLVFVDFRNGDLLQLSGRAEVILDAPEVAAFVGAERMWRFTPQQIV 271 F T GN NPRA L +D+ +++ G A V+ + AE M + PQ Sbjct: 97 QFITQGNLADNPRAFLFLIDYMLRQRIKIWGTARVVEN--------DAELMAKLMPQDYK 148 Query: 272 RRPAALPL 279 RP + L Sbjct: 149 VRPEQVIL 156