BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0128.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0570 [R] COG2962 Predicted permeases Rso Ralstonia solanacearum 240 2e-63 lin0788 [R] COG2962 Predicted permeases Lin Listeria innocua 179 3e-45 PA0485 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa 177 2e-44 Cgl2080 [R] COG2962 Predicted permeases Cgl Corynebacterium glut... 176 3e-44 AGc1973 [R] COG2962 Predicted permeases Atu Agrobacterium tumefa... 175 6e-44 >RSc0570 [R] COG2962 Predicted permeases Rso Ralstonia solanacearum Length = 298 Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/224 (58%), Positives = 167/224 (74%) Query: 3 RKPRVLLGFLLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKLRP 62 R+PRV+ L +L+ NW Y+WAVN ++DASLGYF++PL+ VLL ++L E+LRP Sbjct: 67 RQPRVVGRHLACTGMLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVLGERLRP 126 Query: 63 LQWLSVFMALGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETILLA 122 QW ++ +A+ V+WLTW G LPWI LV+A TFG+YGLLRK + LGALEGLALET+LL Sbjct: 127 GQWFALALAVAGVVWLTWQAGHLPWIALVLATTFGLYGLLRKTSPLGALEGLALETLLLF 186 Query: 123 PLVLAILAVTAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLLQY 182 PL LA L AA N FL A P Q+LL L+GP+TA+PLLLF ARRIPLSLLGLLQY Sbjct: 187 PLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSLLGLLQY 246 Query: 183 ISPTMQLLTGVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWRL 226 +SPT+QLL GV++Y+EPF GP++ G+ +IW L VYS EG RL Sbjct: 247 VSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRL 290 >lin0788 [R] COG2962 Predicted permeases Lin Listeria innocua Length = 308 Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 154/236 (65%), Gaps = 5/236 (2%) Query: 1 VVRKPRVLLGFLLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKL 60 V+ KP+ L+ + +A L++GNW L+++ VNSG + +ASLGY+++PL++VLL VILKE+L Sbjct: 72 VLLKPKTLIAIIAAAFLVTGNWYLFIYTVNSGHVTEASLGYYINPLVNVLLATVILKERL 131 Query: 61 RPLQWLSVFMALGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETIL 120 + ++V A VL LTW G++PW + +A +F +YGL++K+ + GL LET++ Sbjct: 132 SRGEIIAVISATIGVLILTWHLGSVPWAAIGMAVSFSLYGLIKKVVSVSVWTGLTLETMI 191 Query: 121 LAPLVLAILAVTAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLL 180 + P L + A NG +Q + + I+L +G VTAIPLLLFA AA++I +++G L Sbjct: 192 ITPFALIYVLFFA---TNGLMQYAAQTNIILVGAGIVTAIPLLLFATAAKKISYTMVGFL 248 Query: 181 QYISPTMQLLTGVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWRLWSAKGRTLSA 236 QYI PT+ L GV ++ E FD +L F+ IW AL ++++ ++ +AK + L+ Sbjct: 249 QYIGPTLMLALGVLLFKESFDHIQLFAFMFIWLALIIFTISHIYS--AAKIKQLAT 302 >PA0485 [R] COG2962 Predicted permeases Pae Pseudomonas aeruginosa Length = 298 Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 145/223 (65%), Gaps = 1/223 (0%) Query: 3 RKPRVLLGFLLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKLRP 62 + P+ + S LL++ NW+ YVWAVN+G +++ASLGY+++PLI+V+LG ++LKE+LRP Sbjct: 68 QNPQRFVVLAASGLLIASNWMTYVWAVNNGHMLEASLGYYINPLINVMLGMLLLKERLRP 127 Query: 63 LQWLSVFMALGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETILLA 122 LQWL+V +A V W G+LPW+ LV+A TFG YGL+RK A + AL GL +ET LL Sbjct: 128 LQWLAVALASLGVAQQVWQLGSLPWVSLVLALTFGFYGLIRKKAPVAALPGLVVETWLLL 187 Query: 123 PLVLAILAVTAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLLQY 182 PL L L A + S + + +GPVT +PL+ F AAR +P + LG LQY Sbjct: 188 PLALVWLLFFADGPTSETAFWSTPEALWVVAAGPVTLVPLVCFNAAARHLPYATLGFLQY 247 Query: 183 ISPTMQLLTGVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWR 225 ++PT+ LL + ++ E D RLT F IW ALAVYS + WR Sbjct: 248 LAPTLVLLQAILLFGEHLDSSRLTAFAFIWLALAVYSFDA-WR 289 >Cgl2080 [R] COG2962 Predicted permeases Cgl Corynebacterium glutamicum Length = 280 Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 142/214 (66%) Query: 12 LLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKLRPLQWLSVFMA 71 +LS+L ++GNW++YV AVNSG++ +A+LGYF++PL+SV+LG V KE+LR LQ +V +A Sbjct: 66 ILSSLFIAGNWLIYVIAVNSGQVTEAALGYFINPLLSVVLGIVFFKEQLRKLQISAVVIA 125 Query: 72 LGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETILLAPLVLAILAV 131 VL LT++ P++ + +A TFGIYG L+K + A L ET++L P+ + L Sbjct: 126 AAGVLVLTFLGDKPPYLAITLAFTFGIYGALKKQVKMSAASSLCAETLVLLPIAVIYLIG 185 Query: 132 TAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLLQYISPTMQLLT 191 A G++ F LL SG VTA+PLL+FA AA+ IPLS +G+LQY++PTMQ+L Sbjct: 186 LEASGHSTFFNNGSGHMALLICSGLVTAVPLLMFALAAKAIPLSTVGMLQYLTPTMQMLW 245 Query: 192 GVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWR 225 +F+ +E + R GFV IW A+ +Y + L + Sbjct: 246 ALFVVNESVEPMRWFGFVFIWIAVTIYITDSLLK 279 >AGc1973 [R] COG2962 Predicted permeases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 348 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 142/224 (63%) Query: 3 RKPRVLLGFLLSALLLSGNWVLYVWAVNSGRIVDASLGYFMSPLISVLLGYVILKEKLRP 62 R P++L L+A L+S NW +Y+W++ +GR +DA+LGYF++PL S+ LG V+LKEKL P Sbjct: 123 RNPKMLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPLFSIFLGAVLLKEKLYP 182 Query: 63 LQWLSVFMALGAVLWLTWINGALPWIGLVIAATFGIYGLLRKIAHLGALEGLALETILLA 122 Q ++ + AV LTW G+LPW+ + + ++G Y RK +GA +G LE +LL+ Sbjct: 183 AQIAAICLVGLAVAILTWHAGSLPWVSIALTVSWGFYAFFRKTLPIGATQGFLLEVMLLS 242 Query: 123 PLVLAILAVTAAHGNNGFLQASPMSQILLALSGPVTAIPLLLFARAARRIPLSLLGLLQY 182 + ++ A G F+ + LLA SG +TA+PL+L+ A+ + LS +G++QY Sbjct: 243 IPAVLVMIWLAFSGQAHFMGGNSADTWLLAASGVITAVPLILYGNGAKLLRLSTIGIMQY 302 Query: 183 ISPTMQLLTGVFIYDEPFDGPRLTGFVVIWAALAVYSLEGLWRL 226 I+PTM L +FI+ EPFD R+ F +IW ALA+Y+ L RL Sbjct: 303 IAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIYTGSSLMRL 346