BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0122.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 240 3e-63 AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium ... 163 3e-40 SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 162 7e-40 mlr8446 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 146 4e-35 AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 133 4e-31 >RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 229 Score = 240 bits (612), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/228 (56%), Positives = 158/228 (69%), Gaps = 1/228 (0%) Query: 30 MTEAVLPPD-SSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKD 88 MTE D SSE IA DI AI RLPPG KLREEALARVY VSRTKIRAAL+MLAKD Sbjct: 1 MTEETQAADLSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKD 60 Query: 89 KLIDLIPDKGAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERR 148 KLI + PD+GAFV++P E R +F VRR LE A+ REF+ARAT ADYA LE HL EE Sbjct: 61 KLIRIEPDRGAFVARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHE 120 Query: 149 AIEENNPQVRSTLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEE 208 + R+ L++DFH+L+A++VGN VL ++L +L+ RSS+ITM+YQST DA+ S+EE Sbjct: 121 VAASTDVPRRNRLMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEE 180 Query: 209 HCDFIAAAKAGKVEEAVELMLHHLHHVEQALEFDTPSDPKRDLAKELL 256 H F+ AAK G VE A+ LM H+ H E +L F + DL LL Sbjct: 181 HTAFLDAAKRGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALL 228 >AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 225 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 30 MTEAVLPPDSSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDK 89 MTE P S++ I + ++IAE+RL PG +L+EE LA ++ VSR +IR AL +L +D Sbjct: 1 MTEQAGP--STQQIVEKVWLSIAERRLRPGVQLKEEQLATIFGVSRARIRQALSVLERDG 58 Query: 90 LIDLIPDKGAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRA 149 L+ ++P++GAFVSKP+VEE R++FFVRRT+E +V AT D L H+ +ER A Sbjct: 59 LVTIVPNRGAFVSKPSVEEARDVFFVRRTVEQCVVERLCRSATKTDLKKLRDHVAKERVA 118 Query: 150 IEENNPQVRSTLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEH 209 N L FH+LLA +G++ L + L RSSLIT +Y++T C +EH Sbjct: 119 NTRNVTTDIIKLSGGFHLLLAETLGSDFLFTTMRDLISRSSLITAVYRNTDRFNCGPDEH 178 Query: 210 CDFIAAAKAGKVEEAVELMLHHLHHVEQALEFDTPSDPKRDL 251 + + A A+ LM HHL HVE L+ D DL Sbjct: 179 AEIVDAIANNDPSRAIHLMTHHLEHVEAELDLSEIRDLSHDL 220 >SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 225 Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 86/213 (40%), Positives = 127/213 (59%) Query: 39 SSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIPDKG 98 S E I + ++IAE+RL PG +L+EE LA ++ VSR ++R AL +LA+D L+ +IP++G Sbjct: 8 SVEQIVERVWLSIAERRLRPGVQLKEEQLASIFHVSRARVRQALTVLARDGLVTIIPNRG 67 Query: 99 AFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRAIEENNPQVR 158 AFV KP+VEE R++FFVR+ +E +V + + L H++ ER A E++ Sbjct: 68 AFVCKPSVEEARDVFFVRQAVERCVVERLCSSMSKDGVKRLRDHVKNERIANAEDSTTDI 127 Query: 159 STLLSDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEHCDFIAAAKA 218 L FH+LLA + G++ L + L RSSLIT +Y++T C +EH D + A A Sbjct: 128 IKLSGGFHLLLAELTGSDFLFTTMRDLIARSSLITAVYRNTTRFNCGPDEHADIVKAIAA 187 Query: 219 GKVEEAVELMLHHLHHVEQALEFDTPSDPKRDL 251 + + AV LM HHL HVE L+ D DL Sbjct: 188 KEAQRAVHLMSHHLEHVESELDLSEIRDFSHDL 220 >mlr8446 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 252 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 3/213 (1%) Query: 38 DSSEAIARDITIAIAEQRLPPGAKLREEALARVYQVSRTKIRAALVMLAKDKLIDLIPDK 97 D ++AI ++ AI ++RL PG KL E + ++ VSRT RAAL ML+ + L+ ++ Sbjct: 32 DRAQAIRDNLRDAIVDRRLAPGTKLSEGEVGTLFDVSRTVARAALQMLSFEGLVRTERNR 91 Query: 98 GAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADYAVLEAHLREERRAIEENNPQV 157 GAFV+ P+ EE R +F RR +E ++ R T+AD A A L EE R I E P Sbjct: 92 GAFVANPSPEEARQVFASRRLIEPSIAIAACGRVTSADIAAFRAQLDEEGRFIAERGPTA 151 Query: 158 RSTLL---SDFHILLANIVGNEVLTDILVKLAGRSSLITMLYQSTRDAICSTEEHCDFIA 214 R + + DFH+LLA++ GN +L + +L RSSL+ LY + + C EH + + Sbjct: 152 RRSEIKASGDFHLLLASVAGNAILQRFMEELVARSSLVIALYGRSGVSACGHSEHTEIVG 211 Query: 215 AAKAGKVEEAVELMLHHLHHVEQALEFDTPSDP 247 A ++ E A +LMLHH+ H+E L+ + P Sbjct: 212 ALESSDCERASQLMLHHIDHIEADLDLRVRAGP 244 >AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 266 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 24 NRTIHPMTEA--VLPPDSS-----EAIARDITIAIAEQRLPPGAKLREEALARVYQVSRT 76 N+ PM+ + + PDSS +AI + AI ++RL PG KL E + +++VSRT Sbjct: 25 NKQDAPMSLSHITVNPDSSHEDRAQAIRDTLRDAIVDRRLAPGTKLSEAEVGTLFEVSRT 84 Query: 77 KIRAALVMLAKDKLIDLIPDKGAFVSKPTVEETRNIFFVRRTLEAAMVREFVARATAADY 136 +RAAL MLA + L+ ++GAFVS PT +E R +F RR +E +V + + T A Sbjct: 85 VVRAALQMLAYEGLVKAERNRGAFVSNPTPDEARQVFASRRLIEPGVVDAAIEKITPAAA 144 Query: 137 AVLEAHLREERRAIEENNPQVRSTLL---SDFHILLANIVGNEVLTDILVKLAGRSSLIT 193 L HL EE R E P R + DFH++LA + GN +L + +L RSSL+ Sbjct: 145 KKLREHLVEESRHQLERGPTARRAEIRASGDFHLMLAALAGNAILEKFMDELVARSSLVI 204 Query: 194 MLYQSTRDAICSTEEHCDFIAAAKAGKVEEAVELMLHHLHHVEQALEF 241 LY + + C +H D + A +A +A LML HL H+E L+ Sbjct: 205 ALYGRSGVSSCGHNDHADLLDALEAKDAAKARALMLRHLDHIEADLDL 252