BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0113.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2299 [K] COG2188 Transcriptional regulators Pae Pseudomonas ae... 300 2e-81 BMEII0116 [K] COG2188 Transcriptional regulators Bme Brucella me... 180 2e-45 BH0419 [K] COG2188 Transcriptional regulators Bha Bacillus halod... 145 1e-34 BS_yvoA [K] COG2188 Transcriptional regulators Bsu Bacillus subt... 131 2e-30 BS_yurK [K] COG2188 Transcriptional regulators Bsu Bacillus subt... 130 4e-30 >PA2299 [K] COG2188 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 249 Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 149/237 (62%), Positives = 183/237 (77%) Query: 10 SPVPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQREGVIFK 69 SPVPLY Q+K++LR RI DG Y P +++P E+E+G F VSRITVRQAL DLQ+EG+IFK Sbjct: 8 SPVPLYSQLKELLRGRILDGVYPPLSRMPSENELGKAFDVSRITVRQALGDLQKEGLIFK 67 Query: 70 IPGKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQLGVEVGT 129 I GKGTFVA+ KA Q ++ L+G E+MT+ GYE+ NR+ G R +PA A VA++L VE G+ Sbjct: 68 IHGKGTFVARPKAFQNVSTLQGLGESMTQMGYEVINRLHGLRYVPAGARVAERLRVEEGS 127 Query: 130 TVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGRDIFLIFENDFGIALGHADLQI 189 V EI+RVR +NREPVSLE+TYLP+ LG+RL DL RDIFLI END GI LGHADL I Sbjct: 128 PVCEIKRVRLVNREPVSLEVTYLPQALGERLEKADLVTRDIFLILENDCGIPLGHADLAI 187 Query: 190 GAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDFEYLYFRGETFQYHLRIARR 246 AV+AD L AL V EG ++RIERLT+ ADG PLDFEYLY+RG+ FQY LRI R+ Sbjct: 188 DAVLADADLTRALAVEEGAPIMRIERLTHAADGAPLDFEYLYYRGDAFQYRLRIDRQ 244 >BMEII0116 [K] COG2188 Transcriptional regulators Bme Brucella melitensis Length = 244 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 145/240 (60%) Query: 7 VEPSPVPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQREGV 66 VE PLY +V+ L I G + ++LPPE + FGVSR TVR+A+ +L G+ Sbjct: 3 VESDHAPLYAKVEAALAAEIAKGIFPRGSRLPPEDSLIERFGVSRTTVRKAIENLVMRGL 62 Query: 67 IFKIPGKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQLGVE 126 + GKGTFVA+ K QELT L GF E M G + ++ R++PA EVA+ LGV Sbjct: 63 VEIRRGKGTFVAEPKIRQELTELSGFVEDMVALGRKPTANLLDKRSVPACEEVAEHLGVA 122 Query: 127 VGTTVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGRDIFLIFENDFGIALGHAD 186 VGT V I RVR + +S + TYLP ++G+++ + DL IF + EN +G+ L AD Sbjct: 123 VGTQVYRIERVRLADGVAMSFDETYLPLDIGEKIASNDLEVEPIFSLLENKYGMPLVEAD 182 Query: 187 LQIGAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDFEYLYFRGETFQYHLRIARR 246 Q+ AV AD +A+AL ++ G+ + IER TY +P+D+E LY+RG+ ++ R++RR Sbjct: 183 YQLEAVTADDHVAQALGIAPGSPIFLIERTTYCKGSEPVDYEKLYYRGDLIKFCTRLSRR 242 >BH0419 [K] COG2188 Transcriptional regulators Bha Bacillus halodurans Length = 240 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 140/240 (58%), Gaps = 1/240 (0%) Query: 6 IVEPSPVPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQREG 65 I + SP+P+Y Q+++ ++++I G P L E E + VSR+TVRQA+++L +G Sbjct: 2 INKNSPLPIYYQIEEQIKQQIESGVLKPGDMLKSEREYAEYYDVSRMTVRQAINNLVNQG 61 Query: 66 VIFKIPGKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQLGV 125 I+K G GT+V +KK Q L L F E M ++G E +R++ +PATA++A++L + Sbjct: 62 YIYKKKGSGTYVQEKKIEQALNGLTSFTEDMRKRGMEPSSRLLKFELIPATAKIAKELNL 121 Query: 126 EVGTTVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGRDIFLIFENDFGIALGHA 185 + T V EI+R+R+ + P+++E LP L + L NE++ + ++ E + + + A Sbjct: 122 KENTPVTEIKRIRYGDGVPIAIERNLLPANLVKGL-NEEIINQSLYQYIEEELNLRIADA 180 Query: 186 DLQIGAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDFEYLYFRGETFQYHLRIAR 245 I A A A+ L++ +G+ +L IER T+ ADG L+ +R + +++ + + R Sbjct: 181 LQVIEASTASKTEADLLEIQKGSPILLIERKTFLADGTVLELVKSAYRADRYKFMITMQR 240 >BS_yvoA [K] COG2188 Transcriptional regulators Bsu Bacillus subtilis Length = 243 Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 1/236 (0%) Query: 4 FQIVEPSPVPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQR 63 I + SP+P+Y Q+ + L+ +I +G P LP E E FG+SR+TVRQALS+L Sbjct: 1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVN 60 Query: 64 EGVIFKIPGKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQL 123 EG+++++ G+GTFV+K K Q L L F E M +G +R++ ++ + +T E+A L Sbjct: 61 EGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAIL 120 Query: 124 GVEVGTTVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGRDIFLIFENDFGIALG 183 G +++ +I RVR N P+++E +++P EL L NE I+ E I + Sbjct: 121 GCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGEL-NESHFQSSIYDHIERYNSIPIS 179 Query: 184 HADLQIGAVIADHALAEALQVSEGTALLRIERLTYTADGKPLDFEYLYFRGETFQY 239 A ++ A A L + +G +L I+R TY +G + +RG+ + + Sbjct: 180 RAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTF 235 >BS_yurK [K] COG2188 Transcriptional regulators Bsu Bacillus subtilis Length = 242 Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 66/216 (30%), Positives = 120/216 (55%) Query: 10 SPVPLYVQVKDMLRERIFDGTYGPHAQLPPESEMGAIFGVSRITVRQALSDLQREGVIFK 69 S PLY+Q+K ++ + I G Y P A+LP E+E+ + VSRITVR+A+ DL EG + + Sbjct: 6 SSTPLYIQLKQIITDDIKKGVYSPTAKLPTENELCTKYNVSRITVRKAILDLVEEGYLIR 65 Query: 70 IPGKGTFVAKKKAAQELTRLEGFAEAMTRKGYEIHNRVVGHRTLPATAEVAQQLGVEVGT 129 GKGTFV K +EL + G++E M G + + V+ H +PA+ +A++L ++ + Sbjct: 66 QQGKGTFVKSPKLKRELIAVNGYSEFMESTGKKPKHHVLSHDIIPASKPIAEKLQIQPES 125 Query: 130 TVAEIRRVRHLNREPVSLEITYLPEELGQRLRNEDLSGRDIFLIFENDFGIALGHADLQI 189 V E++R+ + + +P++ E+T+ P +L + G + I + + + H + Sbjct: 126 PVVELKRILYNDDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTHNTKLL 185 Query: 190 GAVIADHALAEALQVSEGTALLRIERLTYTADGKPL 225 V A ++ L G AL I++ +T++ +P+ Sbjct: 186 NVVYAQQEESKYLDCDIGDALFEIDKTAFTSNDQPI 221