BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0096.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5214 [E] COG0509 Glycine cleavage system H protein (lipoate-bi...   134   6e-32
YPO0906 [E] COG0509 Glycine cleavage system H protein (lipoate-b...   128   3e-30
RSc3294 [E] COG0509 Glycine cleavage system H protein (lipoate-b...   125   3e-29
gcvH [E] COG0509 Glycine cleavage system H protein (lipoate-bind...   125   3e-29
ZgcvH [E] COG0509 Glycine cleavage system H protein (lipoate-bin...   125   3e-29

>PA5214 [E] COG0509 Glycine cleavage system H protein (lipoate-binding) Pae
           Pseudomonas aeruginosa
          Length = 129

 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 85/122 (69%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           IP  L YA++HEW R E DG++TVGI+D  Q+ LG +V+++ P +G  L  G +AGVVES
Sbjct: 4   IPAELRYAQSHEWARLEADGSVTVGISDHAQEALGDVVFIELPELGKTLAAGQEAGVVES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAYTK 122
            K ASD+++P+ GEVIA+N  LA+TPE +N  PY  W F+L+P+   ++ + LDAA Y  
Sbjct: 64  VKAASDIYSPIGGEVIAINEALADTPEDVNNDPYVSWFFKLKPSNPAELDKLLDAAGYQA 123

Query: 123 MI 124
            +
Sbjct: 124 AV 125


>YPO0906 [E] COG0509 Glycine cleavage system H protein (lipoate-binding) Ype
           Yersinia pestis
          Length = 128

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           +P  L YA +HEW+R +GDG  +VGIT+  Q+ LG +V+V  P VGS +  G+D  V ES
Sbjct: 4   VPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPY-EQWIFRLRPTETFDVSQFLDAAAYT 121
            K ASD++AP++GE++AVNTEL N+PE +N APY + W+F ++  +  ++   LDA AY 
Sbjct: 64  VKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYL 123

Query: 122 KMI 124
             I
Sbjct: 124 AAI 126


>RSc3294 [E] COG0509 Glycine cleavage system H protein (lipoate-binding) Rso
           Ralstonia solanacearum
          Length = 127

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 80/122 (65%)

Query: 4   PDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVESN 63
           P  L Y E+HEW+R E DGTLT+GITD  Q+QLG +V+++ P  G  +++G    VVES 
Sbjct: 5   PVELKYTESHEWVRTEADGTLTIGITDLAQEQLGDIVFLELPDTGRQVKQGEAIAVVESV 64

Query: 64  KTASDVHAPVAGEVIAVNTELANTPEAINGAPYEQWIFRLRPTETFDVSQFLDAAAYTKM 123
           K ASD++APV+GEVIA N +   +PE++N   Y+ W+F+++P    DV+  L A  Y   
Sbjct: 65  KAASDIYAPVSGEVIASNADATESPESVNEDAYDAWLFKIKPANADDVNALLSADQYQAK 124

Query: 124 IG 125
            G
Sbjct: 125 AG 126


>gcvH [E] COG0509 Glycine cleavage system H protein (lipoate-binding) Eco
           Escherichia coli K12
          Length = 129

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           +P  L Y++ HEW+R+E DGT TVGIT+  Q+ LG +V+V  P VG+ +  G D  V ES
Sbjct: 4   VPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYE-QWIFRLRPTETFDVSQFLDAAAYT 121
            K ASD++APV+GE++AVN  L+++PE +N  PY   WIF+++ ++  ++   LDA AY 
Sbjct: 64  VKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYE 123

Query: 122 KMI 124
            ++
Sbjct: 124 ALL 126


>ZgcvH [E] COG0509 Glycine cleavage system H protein (lipoate-binding) EcZ
           Escherichia coli O157:H7 EDL933
          Length = 129

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 3   IPDTLIYAETHEWIRQEGDGTLTVGITDFGQDQLGPLVYVQTPTVGSVLRRGADAGVVES 62
           +P  L Y++ HEW+R+E DGT TVGIT+  Q+ LG +V+V  P VG+ +  G D  V ES
Sbjct: 4   VPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAES 63

Query: 63  NKTASDVHAPVAGEVIAVNTELANTPEAINGAPYE-QWIFRLRPTETFDVSQFLDAAAYT 121
            K ASD++APV+GE++AVN  L+++PE +N  PY   WIF+++ ++  ++   LDA AY 
Sbjct: 64  VKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYE 123

Query: 122 KMI 124
            ++
Sbjct: 124 ALL 126