BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0073.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 189 6e-48 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 189 6e-48 PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 189 7e-48 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 189 9e-48 BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 189 9e-48 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 107/269 (39%), Positives = 155/269 (57%) Query: 14 VSALPLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMF 73 ++A+PL + R W R R +AM AA+ ++ LI +A+FA WI P D + Sbjct: 12 LNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDY 71 Query: 74 TRLKPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGG 133 L + H FG D LGRD+ SR+++G ++SL G+ V IG+ +G+LAGY G Sbjct: 72 DNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEG 131 Query: 134 FINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVR 193 + + IMR DVL+AFP +LLAIA+ LG+GI N + ++ I IP AR+ T ++ Sbjct: 132 WWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLK 191 Query: 194 RSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPE 253 + ++++AR+ GA TI+ H+L + I V+ T I S+I A+ LSFLGLG +PP Sbjct: 192 QQTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPT 251 Query: 254 PEWGLMLNTLRTAIYTQPWVAALPGAFIF 282 PEWG MLN R + P VA P IF Sbjct: 252 PEWGAMLNEARADMVIAPHVAVFPALAIF 280 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 107/269 (39%), Positives = 155/269 (57%) Query: 14 VSALPLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMF 73 ++A+PL + R W R R +AM AA+ ++ LI +A+FA WI P D + Sbjct: 12 LNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDY 71 Query: 74 TRLKPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGG 133 L + H FG D LGRD+ SR+++G ++SL G+ V IG+ +G+LAGY G Sbjct: 72 DNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEG 131 Query: 134 FINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVR 193 + + IMR DVL+AFP +LLAIA+ LG+GI N + ++ I IP AR+ T ++ Sbjct: 132 WWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLK 191 Query: 194 RSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPE 253 + ++++AR+ GA TI+ H+L + I V+ T I S+I A+ LSFLGLG +PP Sbjct: 192 QQTFIESARSIGASDMTILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPT 251 Query: 254 PEWGLMLNTLRTAIYTQPWVAALPGAFIF 282 PEWG MLN R + P VA P IF Sbjct: 252 PEWGAMLNEARADMVIAPHVAVFPALAIF 280 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Pab Pyrococcus abyssi Length = 287 Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 155/256 (60%), Gaps = 1/256 (0%) Query: 23 KRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMFTRLKPIGTP 82 K+ W R +N L MI I++ + +A+FAP+I P P + RLKP Sbjct: 6 KKGESMWHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKP-PCE 64 Query: 83 GHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGGFINTAIMRT 142 + FGTDE GRD+ SR++ G R++L +GI L + IG +G+++GY GG ++ IMR Sbjct: 65 KYWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRA 124 Query: 143 IDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVRRSDYVDAAR 202 +D+++AFP+++LA+A+ LG G++NA+ ++ +V AR+ + T V+ +++AAR Sbjct: 125 VDIVWAFPALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAAR 184 Query: 203 ASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPEPEWGLMLNT 262 A G I+ +++L NV+ I V T I ++I AS LSFLGLG +PP P+WGLML++ Sbjct: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSS 244 Query: 263 LRTAIYTQPWVAALPG 278 R + PW + PG Sbjct: 245 ARVYVTRAPWYSIFPG 260 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 189 bits (479), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 155/269 (57%) Query: 14 VSALPLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPADPFATSMF 73 ++A+PL + R W R R +AM AA+ ++ LI +A+FA WI P D + Sbjct: 12 LNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFDY 71 Query: 74 TRLKPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIGILAGYAGG 133 L + H FG D LGRD+ SR+++G ++SL G+ V IG+ +G+LAGY G Sbjct: 72 DNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEG 131 Query: 134 FINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIAESVTTQVR 193 + + IMR DVL+AFP +LLAIA+ LG+GI N + ++ I IP AR+ T ++ Sbjct: 132 WWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLK 191 Query: 194 RSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFLGLGVKPPE 253 + ++++AR+ GA T++ H+L + I V+ T I S+I A+ LSFLGLG +PP Sbjct: 192 QQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPT 251 Query: 254 PEWGLMLNTLRTAIYTQPWVAALPGAFIF 282 PEWG MLN R + P VA P IF Sbjct: 252 PEWGAMLNEARADMVIAPHVAVFPALAIF 280 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 301 Score = 189 bits (479), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 160/273 (58%), Gaps = 11/273 (4%) Query: 7 QATAATPVSALPLPAFKRSRGHWANVAARIVRNPLAMIAAVILLALIGIAVFAPWIMPAD 66 +ATAA P P P + W N ++ +N AM+ +++ I +A+ P+ D Sbjct: 12 EATAAPP----PNPRIQS----WKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHD 63 Query: 67 PFATSMFTRL-KPIGTPGHLFGTDELGRDLLSRLMLGGRLSLFMGITPVLTAFVIGSGIG 125 P+ ++ +L +P + H FGTD GRD+ +R++ G ++L++G V+ ++G +G Sbjct: 64 PYEPNVMNKLAEP--SAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILG 121 Query: 126 ILAGYAGGFINTAIMRTIDVLYAFPSVLLAIALSGALGAGIVNALTSLTIVFIPQIARIA 185 +++GY G ++T IMR +DVL AFP +LLA+A+ LG I N + ++ I IP ARI Sbjct: 122 VVSGYYGRLVDTVIMRIMDVLLAFPGILLALAIISILGGSINNVIIAVGIFSIPVFARIV 181 Query: 186 ESVTTQVRRSDYVDAARASGAGAFTIVRAHVLGNVLGPIFVYSTSLISVSMILASGLSFL 245 T VR+ +Y+DA +A GA I+ H+L NVL PI V T I+ S++ AS LSFL Sbjct: 182 RGSTLAVRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFL 241 Query: 246 GLGVKPPEPEWGLMLNTLRTAIYTQPWVAALPG 278 GLG +PP PEWG ML+ R +Y P VA PG Sbjct: 242 GLGAQPPIPEWGAMLSDGRNYMYDAPHVALFPG 274