BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0069.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2102 [K] COG2186 Transcriptional regulators Rso Ralstonia sol... 149 8e-36 PA0120 [K] COG2186 Transcriptional regulators Pae Pseudomonas ae... 100 3e-21 DR1905 [K] COG2186 Transcriptional regulators Dra Deinococcus ra... 80 4e-15 CC2813 Non COG 78 2e-14 mll6911 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium... 77 2e-14 >RSc2102 [K] COG2186 Transcriptional regulators Rso Ralstonia solanacearum Length = 254 Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 12/206 (5%) Query: 1 MPNIAAQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGK 60 +P+ AQ LQ++I+SG Y +G LP QR+LA SLG+SRASLREAL++LE LG + +P K Sbjct: 4 IPSSVAQALQQRIMSGDYASGTRLPPQRELAASLGVSRASLREALTVLETLGLVDILPSK 63 Query: 61 GTLVTSGRSSAA------STPARSGAALPSSAELQSTFQLRYVFEPAAAALAARVINAHT 114 G +V + A +TPA G P + +LR V EP ALAA ++A Sbjct: 64 GVVVRGPHADAERMHRPFATPAL-GTLSP-----RQLIELRLVLEPGWTALAATRMHAAG 117 Query: 115 TPRLWGVQARFEDALKNVDLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRISHSQRL 174 +L +Q + AL+ DL+SA++ADL+FH L+AELSGN GL+ + E I HS RL Sbjct: 118 LRQLQWLQKQLAHALERNDLLSAAEADLQFHLLLAELSGNPGLVAMAGQLEHAIGHSLRL 177 Query: 175 PFADHSRIWETAEEHRAIAAAISAGD 200 PFA + + A EH AI AI AGD Sbjct: 178 PFAKNGADDQPAREHDAIVQAIGAGD 203 >PA0120 [K] COG2186 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 228 Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 16/235 (6%) Query: 3 NIAAQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGT 62 N AQ L I G + GQMLPGQR+LAE + ISR SLREA+ +LE LG +R++PGKG Sbjct: 9 NAVAQRLLDTIEQGRWVAGQMLPGQRELAEQMEISRPSLREAIMVLETLGVVRSLPGKGV 68 Query: 63 LVTSGRSSAASTPARSGAALPSSAELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQ 122 +V S P R AA P A ++ QLRY EP + A+ A L + Sbjct: 69 MVLE-----RSEPLREVAA-PGEATMEDVLQLRYALEPFIVGIVAQSAGAAEISELRLLL 122 Query: 123 ARFEDALKNVDLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRISHSQRLPFADHSRI 182 +A+++ D + +A FH+ + +L+ N + V + + S L Sbjct: 123 LDLREAVEDGDPQALVEAYTAFHRRLVKLTSNPIFLSVSEQIGSALERSDNLVRRQPEYA 182 Query: 183 WETAEEHRAIAAAISAGDRLPRADXRARRHRVSPTLIKRFFHDLKPVSITLRRPQ 237 E +EH AI AI D RA R+H ++ ++I LR PQ Sbjct: 183 EEILQEHDAILRAIRQHDS-ERASQAMRQH---------ILNEGARLNIDLRLPQ 227 >DR1905 [K] COG2186 Transcriptional regulators Dra Deinococcus radiodurans Length = 245 Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 26/209 (12%) Query: 6 AQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVT 65 A+ LQ+ I GT+K G LPGQR+LA+ G S A +REA+S+L A G + A PG+GT+V Sbjct: 23 AEKLQQLINDGTFKPGDRLPGQRELAQQFGTSLAGVREAISVLSAAGLVDARPGRGTVV- 81 Query: 66 SGRSSAASTPARSG--AALPSSAELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQA 123 RS + P G A+ E + Q R + E A A A TP A Sbjct: 82 --RSVGGAVPTFDGWLGAVGDEQEFEELMQARRMLEAFTIAQAV----ARATP------A 129 Query: 124 RFEDALKNVDLVSA--------SQADLEFHQLIAELSGNGGLMQVVRDFETRISHSQRLP 175 + D V+ + A ++AD++ H L++E++GN + +++R + + R Sbjct: 130 QVSDLRGAVEAMRAVMGSAGAYAEADMQLHLLLSEVAGNRVVTRLMRAIQRPLMEQLRRS 189 Query: 176 FADHSRIWETAEE---HRAIAAAISAGDR 201 A + A+ H I I GDR Sbjct: 190 IAHLQATGQLADNLATHERIVDGIERGDR 218 >CC2813 Non COG Length = 249 Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 82/175 (46%), Gaps = 18/175 (10%) Query: 6 AQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVT 65 A ++ I +G Y+ G LP +R+LAE G+SR +LREA+ LE LG I A G G VT Sbjct: 12 ADSVADDIEAGRYRLGDRLPTERELAEQFGVSRPTLREAMIALEMLGMIEARHGLGIYVT 71 Query: 66 SGRSSAASTPARSGAALPSSAELQSTFQL---RYVFEPAAAALAARVINAHTTPRLWGVQ 122 + AR A P F+L R +FE AAALAA I L G+ Sbjct: 72 A--------TARPLAPSPEIDFEIGAFELIEARRLFEGEAAALAATSITDEQIAALEGLL 123 Query: 123 ARFEDALKNVDLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRISHSQRLPFA 177 R + + + AD EFH IA +GNG ++ + ET R P A Sbjct: 124 TRMHEE----EEIRGEDADREFHLTIARATGNGAIIATI---ETLWDWRNRSPLA 171 >mll6911 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium loti Length = 267 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 5/198 (2%) Query: 7 QTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVTS 66 Q ++ IL G +TG LPG+R+LA +SR LR+AL LE G + G GT V Sbjct: 19 QQIESLILEGVLRTGDRLPGERELARQFDVSRPILRDALKALEGRGLLTTKAGGGTHVAD 78 Query: 67 GRSSAASTPARSGAALPSSAELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQARFE 126 + P ++ A + + R E AA AAR L + AR + Sbjct: 79 IIGQLFTKPVADLISMHRKA-VTDYLEYRREIEGIAAEYAARRATPEDLALLDRIMARMD 137 Query: 127 DALKNVDLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRIS----HSQRLPFADHSRI 182 +A + D ++ D+EFHQ I E + N L+ +R +S ++ L F Sbjct: 138 EAHRTGDFDDEAEIDVEFHQAICECAHNILLLHTLRSCYRLLSEGVFQNRLLVFTVPGAR 197 Query: 183 WETAEEHRAIAAAISAGD 200 +H+AI AA+ AGD Sbjct: 198 EALLAQHKAIHAAVKAGD 215