BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0052.p         (221 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0181 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...   102   8e-22

>PA0181 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 310

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 6/82 (7%)

Query: 1   VRSWTLRNGKARGKNDGMQAVIDLKVKMTMSDPNAACEIAEMGLGITLTAMPHAVVYLDK 60
           VRSW LR      + +G +A I+L+ +MTMSDP A CE+A MGLGITL  M HA  YL+ 
Sbjct: 200 VRSWPLR------RRNGEEAPIELRERMTMSDPEATCEVAAMGLGITLVCMQHAYAYLES 253

Query: 61  GSLVRVLPDWYVDGGMLALYFA 82
           G+LVRVLPDWYVD G  +LY+A
Sbjct: 254 GALVRVLPDWYVDAGNTSLYYA 275