BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0049.p (424 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1120 [G] COG1653 ABC-type sugar transport system, periplasmic ... 177 5e-44 CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic... 165 2e-40 BH1079 [G] COG1653 ABC-type sugar transport system, periplasmic ... 163 8e-40 alr2722 [G] COG1653 ABC-type sugar transport system, periplasmic... 156 7e-38 STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic... 156 1e-37 >TM1120 [G] COG1653 ABC-type sugar transport system, periplasmic component Tma Thermotoga maritima Length = 436 Score = 177 bits (449), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 117/432 (27%), Positives = 215/432 (49%), Gaps = 27/432 (6%) Query: 13 ALFASALTASSMASAATELTMYYPIAVGGPLTDVIDGMINDFQKSNPDIKVKAVYSGNYD 72 L L +S+A + A+GG +++ M DF K++PDI+V+ Y+G+Y Sbjct: 6 VLLMILLVVTSLAKVKIQFWH----AMGGWRIELLQNMAEDFMKTHPDIEVEVQYTGSYR 61 Query: 73 ETRVRALSAIKGGQPAQLSVLGALDTYDLIDQNLIEPFDKVATSAEDKAW-LQSFYPGLM 131 +T + ++A++GG P + + + T +ID + P + +D ++ + F P ++ Sbjct: 62 DTLNKLVAAVQGGTPPHVVQIYEIGTQFMIDSGIAVPIGDLI--EKDPSFDVGKFLPQVL 119 Query: 132 ANGTIGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAAATKLTGKDKFGL 191 + G ++ +PF S +++YNK +F+ GL+P+ PP+T+ E++ KLT KD+ G Sbjct: 120 DYYRVKGKLYSMPFNSSNPILYYNKTLFKEVGLDPNKPPRTFNELIEYCKKLTVKDEKGN 179 Query: 192 MIPS-TGYPY--WMFQAF-AIQNGVSLMNKEG-----TQVYFNTPAAVEALEFWRSLAAT 242 ++ + +P W F+ F A+QN + N+ G T+ FN A+ L+ W +L Sbjct: 180 IVRAGITWPLHSWFFEQFVALQNAPLVDNENGRAGRATKAVFNHEGALRFLKLWDTLTKE 239 Query: 243 HKVSPAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVK---KEAKFDFGVAMLP---ANKQ 296 + +W RQ F+ + AM+ +T ++ + KE F+ G A LP + Sbjct: 240 GLMINTTKEDWTGARQLFISQKVAMLISSTSDVKLMMDAAKENGFELGTAFLPKPEGVEL 299 Query: 297 PGSPVGGGNFYLFKGSSPAQQAASVNFVRWMTAPERAAQWSIATGYVGTSPASYNTPALR 356 G+P+GGG+ ++ G + A+ FV+WM PE+ +W + TGY + T + Sbjct: 300 GGTPIGGGSLWIIGGHPEEEIKAAWEFVKWMAEPEQQIRWHLGTGYFPVRKDAVETLLYQ 359 Query: 357 DYAKTFPQALVARDQLAVAIPEFSTEQTA-----RVREALSNAVQAALTGTKTSKQALDE 411 Y +P L A QL +++ +T VR+ + A++ + G T ++AL Sbjct: 360 GYYSEYPHHLTALLQLLLSVQTPNTRGAVIGPFPEVRDIIETAIEKMINGEMTPEEALAW 419 Query: 412 AQATAERLLKPY 423 A+ A R ++ Y Sbjct: 420 AEKEATRAIREY 431 >CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic component Cac Clostridium acetobutylicum Length = 447 Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/444 (27%), Positives = 214/444 (48%), Gaps = 33/444 (7%) Query: 1 MLSKLIKKTALAALFASALT------ASSMASAATELTMYYPIAVGGPLTDVIDGMINDF 54 M K+I + AL A+ L+ AS+ S ++T ++ A+ G + ++ M+ DF Sbjct: 1 MKRKIISLLLIGALSATILSGCAQSKASASESKTVQITFWH--AMSGKNGEALNKMVEDF 58 Query: 55 QKSNPDIKVKAVYSGNYDETRVRALSAIKGGQPAQLSVLGALDTYDLIDQNLIEPFDKVA 114 S+ DIKVKA + G YDE + SA KGG+ + + + T +ID EP Sbjct: 59 NNSHSDIKVKAEFQGKYDEELNKLKSAEKGGEAPDIVQVYDIGTRFMIDSKWAEPIQNFI 118 Query: 115 TSAEDKAWLQSFYPGLMANGTIGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWK 174 +DK S P L+A T+ ++ +PF ST +++YNK F+ A L+P+ PPKT+ Sbjct: 119 D--KDKYDTSSLEPNLLAYYTVNNKLYSMPFNSSTPILYYNKSAFKEADLDPNKPPKTFS 176 Query: 175 EMLAAATKLTGKD------KFGLMIPSTGYPYWMFQAFAIQNGVSLMNK------EGTQV 222 E+ + L KD ++G + G W+F+ + ++ G + +N T+V Sbjct: 177 ELERYSKALAKKDSSGNVTRYGFSMAIYG---WLFEQYLVKQGKNYVNNGNGRSSAATKV 233 Query: 223 YFNTP-AAVEALEFWRSLAATHKVSPAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVKKE 281 F++ ++ L+ W+ L + V G E T AF+ G+TAM +T +L Sbjct: 234 DFDSNGGGLKFLKEWKQLVDSGYVGNLGRNEDDT-ENAFIAGKTAMYIESTADLKHDLNS 292 Query: 282 --AKFDFGVAMLPA---NKQPGSPVGGGNFYLFKGSSPAQQAASVNFVRWMTAPERAAQW 336 +F+ G A LP+ G +GG + ++ K +Q A+ F+++M + ++ A W Sbjct: 293 IGGRFELGTAPLPSFDGTSDGGVSIGGASMWILKNKDAEKQKAAFEFIKYMVSSKQQAYW 352 Query: 337 SIATGYVGTSPASYNTPALRDYAKTFPQALVARDQLAVAIPEFSTEQTARVREALSNAVQ 396 S TGY + +Y+ +++ K PQ A DQL A P+ + V ++ Sbjct: 353 STETGYFPVTKKAYDEDIMKENLKKSPQFKTAIDQL-YASPKTAVGALMAVFPEARQTIE 411 Query: 397 AALTGTKTSKQALDEAQATAERLL 420 A + K++ +EA + + +L+ Sbjct: 412 ANIEEMLQKKESPEEAISNSSKLI 435 >BH1079 [G] COG1653 ABC-type sugar transport system, periplasmic component Bha Bacillus halodurans Length = 459 Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 115/427 (26%), Positives = 202/427 (47%), Gaps = 29/427 (6%) Query: 16 ASALTASSMASAATELTMYYPIAVGGPLTDVIDGMINDFQKSNPDIKVKAVYSGNYDE-- 73 S+ A + A +L + + + G L + +D ++ + +S ++++ Y G+Y+E Sbjct: 39 GSSEEAGEGVANAEKLQVEFWHGMSGGLGETLDELVATYNESQDEVEIVPEYQGSYEELL 98 Query: 74 TRVRALSAIKGGQPAQLSVLGALDTYDLIDQNLIEPFDK-VATSAEDKAWLQSFYPGLMA 132 T+ R++ P + V + T +I+ I P + + D + L+ ++ Sbjct: 99 TKFRSVGGTSD-SPGLVQVF-EIGTKYMIESGFITPVQEWIDKDNYDVSQLEE---NILT 153 Query: 133 NGTIGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAAATKLTGKDKFGLM 192 ++ G ++ +PF ST ++YNKD F GL+P+ PP+++ E+ AA KLT D++G Sbjct: 154 YYSVDGDLYSMPFNSSTPALYYNKDAFEEVGLDPENPPRSFSEIKEAAEKLTTDDRYGFS 213 Query: 193 IPSTGYPYWMFQAFAIQNGVSLMNK------EGTQVYFNTPAAVEALEFWRSLAATHKVS 246 I G W F+ G +N E T+ FN + E+ + Sbjct: 214 ILGYG---WFFEQLLATQGADYVNNDNGRTDEATEAVFNGEEGLRVFEWIYDMNNDGTFG 270 Query: 247 PAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVKKEAKFDFGVAMLPA--NKQP-GSPVGG 303 G W LR AF Q AM+ +T + + A F+ GV +P + +P G +GG Sbjct: 271 YFGT-NWDDLRAAFQAEQVAMILDSTAGIKGTVEAAPFEVGVGFIPHADDVEPNGVIIGG 329 Query: 304 GNFYLFKGSSPAQQAASVNFVRWMTAPERAAQWSIATGYVGTSPASYNTPALRDYAKTFP 363 G+ ++ G S +QAA+ +F++++ PE A+W I TGY +PA+Y P + + P Sbjct: 330 GSIWMANGISEEEQAAAFDFLKYLQTPEVQAEWHINTGYFAINPAAYEEPIVEQEHENIP 389 Query: 364 QALVARDQLAVAIPEFSTEQTARV------REALSNAVQAALTGTKTSKQALDEAQATAE 417 Q V +QL +P +T Q A + R+ + A++ L GT K ALD+A Sbjct: 390 QLRVPIEQLQQTVPSTAT-QGALIPVFPESRQHVVTALENMLQGTD-PKTALDQAAEGTN 447 Query: 418 RLLKPYR 424 R ++ Y Sbjct: 448 RAIEVYN 454 >alr2722 [G] COG1653 ABC-type sugar transport system, periplasmic component Nos Nostoc sp. PCC 7120 Length = 432 Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 117/426 (27%), Positives = 212/426 (49%), Gaps = 36/426 (8%) Query: 5 LIKKTALAALFASALTASSMA-SAATELTMYYPIAVGGPLT-DVIDGMINDFQKSNPDIK 62 LI T L SA ++ A S+ LT+++ + P DV +++ F +++PDI Sbjct: 22 LIALTLTMCLILSACQSTIQAQSSIINLTLWH--GINPPSNRDVFQQLVDKFNQTHPDIH 79 Query: 63 VKAVYSGNYDETRVRALSAIKGGQPAQLSVLGALDTYDLIDQNLIEPFDKVATSAEDKAW 122 ++++Y+G ++ + L+A+ G P + T L+D I P ++ + KA Sbjct: 80 IESLYAGQLEQQIPKVLTAVVGNVPPDILFFNPQITGQLVDLAAIRPLEEWLDKSPLKA- 138 Query: 123 LQSFYPGLMANGTIGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAAATK 182 P + GH+W +P + +FY D+F+AAG+ P+TW+E+ A K Sbjct: 139 --EIIPNCFGEMELDGHIWSVPLFAGNVGIFYRPDLFKAAGIT--ELPRTWEELRQVAKK 194 Query: 183 LTGK-------DKFGLMIPSTGYPYWMFQAFAIQNGVSLMNKEGTQVYFN-----TPAAV 230 LT D++G+++P + +F F L++ +GT V N P A+ Sbjct: 195 LTIDRNGDRIPDQYGMLMPLGKGEWTVFTWFPF-----LLSSDGTIVENNHPSLINPGAI 249 Query: 231 EALEFWRSLA--ATHKVSPAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVKKEAKFDFGV 288 AL+FW++L + K+S A E G FV G+ AM TG T++ K ++ DF V Sbjct: 250 AALQFWQNLIQDGSAKLS---APERGYEEDDFVAGRVAM--QLTGPWTSIMK-SQVDFDV 303 Query: 289 AMLPANKQPGSPVGGGNFYLFKGSSPAQQAASVNFVRWMTAPERAAQWSIATGYVGTSPA 348 +P N P S + GN ++ K ++P ++ A+ F+ ++ + + +WSI +G++ + Sbjct: 304 LPIPINLHPASVLASGNMFVMK-TTPQKEQAAWKFLEYILSEQFQTEWSIGSGFLPVNLK 362 Query: 349 SYNTPALRDYAKTFPQALVARDQLAVAIPEFSTEQTARVREALSNAVQAALTGTKTSKQA 408 S +PA ++ + P V +Q+AV+ +R+ E+L A++A + G + + A Sbjct: 363 SIQSPAYQEAIRQKPALQVFLEQMAVSGSRPIISGYSRLSESLGRAIEATMLGA-SPESA 421 Query: 409 LDEAQA 414 L +AQA Sbjct: 422 LKKAQA 427 >STM3557 [G] COG1653 ABC-type sugar transport system, periplasmic component Sty Salmonella typhimurium LT2 Length = 438 Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/440 (27%), Positives = 209/440 (47%), Gaps = 31/440 (7%) Query: 6 IKKTALAALFASALTASSMASAATELTMYYPIAVGGPLTDVIDGMINDFQKSNPDIKVKA 65 ++ TAL + A T ++A T + ++ ++ G L +D + F ++NPD K+ Sbjct: 4 LRHTALGLALSLAFTGQALA--VTTIPFWH--SMEGELGKEVDSLAQRFNQANPDYKIVP 59 Query: 66 VYSGNYDETRVRALSAIK-GGQPAQLSVLGALDTYDLIDQNLIEPFDKVATSAEDKAWLQ 124 VY GNY++ ++A + G PA L V + T ++ I+P +V A Sbjct: 60 VYKGNYEQNLSAGIAAFRTGNAPAILQVY-EVGTATMMASKAIKPVYEVFKDAGINFDES 118 Query: 125 SFYPGLMANGT--IGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAAATK 182 F P + T GH+ PF ST V++YNKD F+ AGL+P+ PPKTW+E+ K Sbjct: 119 QFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQELADYTAK 178 Query: 183 LTGKD-KFGLMIPSTGYPYWM-FQAFAIQNGVSLMNK----EGTQ--VYFNTPAAVEALE 234 L K G ++G+ W+ + F+ NG+ +K +GT + FN P V+ + Sbjct: 179 LRAAGMKCGY---ASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIA 235 Query: 235 FWRSLAATHKVSPAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVKKEAKFDFGVAMLPAN 294 + S G + T + F G AM ++G+L +++ AKF++GV M+P + Sbjct: 236 LLEEMNKKGDFSYVGRKDEST--EKFYNGDCAMTTASSGSLANIRQYAKFNYGVGMMPYD 293 Query: 295 KQ-PGSP----VGGGNFYLFKGSSPAQQAASVNFVRWMTAPERAAQWSIATGYVGTSPAS 349 G+P +GG + ++ +G F+ ++ PE AA+W TGY+ + A+ Sbjct: 294 ADIKGAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITTAA 353 Query: 350 YNTPALRDYAKTFPQALVARDQLAVAIPEFSTE-----QTARVREALSNAVQAALTGTKT 404 Y + Y P A +A Q+ P T+ ++R + +++ TG KT Sbjct: 354 YELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGNMPQIRTIVDEELESVWTGKKT 413 Query: 405 SKQALDEAQATAERLLKPYR 424 +QALD A +LL+ + Sbjct: 414 PQQALDTAVDRGNQLLRRFE 433