BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0028.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12    75   3e-14
mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    65   5e-11
PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer...    59   3e-09
mlr2880 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ...    58   5e-09
AGl1406 [K] COG0583 Transcriptional regulator Atu Agrobacterium ...    57   9e-09

>perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12
          Length = 297

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 8/129 (6%)

Query: 1   VPLCSPALLR--DKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDR 58
            PLCSP L     KP+     D+  +TLIQ  +   +W  WF  N M  PP      FDR
Sbjct: 166 TPLCSPQLAERLKKPE-----DLYALTLIQCDVQLYQWKGWFEANKMT-PPNNYGLRFDR 219

Query: 59  ASLALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKK 118
           + +A+AAAV+ +G+ LES  LAE+EIA+G+LV         +    H+L + + +     
Sbjct: 220 SFMAIAAAVDGLGVVLESKLLAEREIASGKLVCPLVNSTSEIHYIGHYLVFPQHQHMHSA 279

Query: 119 IMRFRDWLF 127
           +  F+ WL 
Sbjct: 280 LDVFKTWLL 288


>mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 303

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 2   PLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMK-LPPGRPMPSFDRAS 60
           P+CSP LL+ +       D+    LI      + W+ W    G+  + P R +  FD A+
Sbjct: 167 PVCSPELLQGEHPLRLPGDLRHHKLIHDAFR-IDWATWLQQAGVDGIDPKRGV-RFDSAT 224

Query: 61  LALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIM 120
            A+ AAV+  G+ L  + L   ++A G LVR     LKS    +++L Y +G    KKI 
Sbjct: 225 FAVEAAVHGEGVLLGRSALVSADLAAGRLVRPFDLALKSA--ASYYLVYPDGALRQKKIR 282

Query: 121 RFRDWLFLQ 129
            FRDWLF +
Sbjct: 283 AFRDWLFAE 291


>PA0448 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 302

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 1   VPLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRAS 60
           VP+CSP LL  +   L+   +A + L+Q +  P  W  WF   G+ +      P ++  S
Sbjct: 166 VPVCSPELLGGR-RTLSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFS 224

Query: 61  LALAAAVNSVGIALESTRLAEQEIANGEL-VRLDGGELKSVLRETHFLSYREGEKNSKKI 119
           +   AA++ +G+AL    L + E+A+G L V +    L       ++L   E    S  +
Sbjct: 225 MLAQAAMHGMGVALIPPFLIQDELADGRLIVPMQHAYLSE---NAYYLIIPERRVESAML 281

Query: 120 MRFRDWLFLQAGLNAELN 137
             FRDWL  +A    E N
Sbjct: 282 NAFRDWLVEEARQYREAN 299


>mlr2880 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 303

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2   PLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61
           P+ SP  L  +  A T ADI    L+     P  W++WF   G+  P G P   F++   
Sbjct: 170 PVVSPEFLASRAIA-TPADIGRQPLLHMATRPGAWTEWFEHQGLSAPAG-PGMQFEQFGT 227

Query: 62  ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121
           A  A +  +G+AL    L   E+  G+LV   G  ++S  R  ++L     ++    +  
Sbjct: 228 AAQACMAGLGVALLPLLLIAGELQRGQLVPAPGQPMQS--RSAYYLVVPHDKREHPPVAS 285

Query: 122 FRDWLFLQ 129
           FRDWL  Q
Sbjct: 286 FRDWLLEQ 293


>AGl1406 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 248

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 1   VPLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRAS 60
           VP+ SPALLR +       D+A   L+  T  P  W++W  +NG+          FD+ S
Sbjct: 118 VPVASPALLR-RAGVNRAQDLAGQPLLHVTTRPKLWTEWLEMNGVTADNAYQGSRFDQFS 176

Query: 61  LALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIM 120
           + + AA + +G AL    L E E+A+  L  +    L++   ++++++  EG +++    
Sbjct: 177 MIIEAAASGIGFALLPRYLIEAELASSRLEIVFDIPLQT--DKSYYVALPEGRQDNVLAR 234

Query: 121 RFRDWLFLQAG 131
            F+ WL  Q G
Sbjct: 235 AFQAWLLDQVG 245