BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0026.p         (113 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3159 [J] COG2890 Methylase of polypeptide chain release facto...   180   8e-46
NMB1232 [J] COG2890 Methylase of polypeptide chain release facto...   117   9e-27
NMA1400 [J] COG2890 Methylase of polypeptide chain release facto...   113   1e-25

>RSc3159 [J] COG2890 Methylase of polypeptide chain release factors Rso
           Ralstonia solanacearum
          Length = 376

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 96/113 (84%)

Query: 1   LIVCNPPWVPAKPSSPIEHAIYDPDSRMLRGFLDGLAAHLTPNGEGWLILSDFAEHLGLR 60
           LIVCNPPW+PA+PSSPIE A+YDPDSRMLRGFLDGLAAHL P GEGWLILSDFAEHLGLR
Sbjct: 264 LIVCNPPWLPARPSSPIERAVYDPDSRMLRGFLDGLAAHLEPGGEGWLILSDFAEHLGLR 323

Query: 61  SRAELQAMFDKAGLRVALKQDIKPRHPRSSDAEDPLHAARVKEVTSLWVLKTK 113
           +R  L AM + AGL+V  + D+KP+HP++SDA DPL+ AR  EVTSLW LK +
Sbjct: 324 TRDALLAMIEAAGLQVVGRDDVKPKHPKASDANDPLYQARAAEVTSLWRLKAR 376


>NMB1232 [J] COG2890 Methylase of polypeptide chain release factors Nme
           Neisseria meningitidis MC58
          Length = 306

 Score =  117 bits (292), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 74/111 (66%)

Query: 1   LIVCNPPWVPAKPSSPIEHAIYDPDSRMLRGFLDGLAAHLTPNGEGWLILSDFAEHLGLR 60
           LIVCNPPW+PAKP+S +E A+YDP+S ML  FL     HL P+GE  LI+SD AEHL LR
Sbjct: 194 LIVCNPPWLPAKPTSAVESALYDPESAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLHLR 253

Query: 61  SRAELQAMFDKAGLRVALKQDIKPRHPRSSDAEDPLHAARVKEVTSLWVLK 111
               L   F +AGLRVA     KP+H ++++  DPL  AR +E T L+ LK
Sbjct: 254 PSDFLDKAFAQAGLRVADMMKTKPKHKKAANPSDPLAFARTRETTFLYRLK 304


>NMA1400 [J] COG2890 Methylase of polypeptide chain release factors NmA
           Neisseria meningitidis Z2491
          Length = 331

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 73/111 (65%)

Query: 1   LIVCNPPWVPAKPSSPIEHAIYDPDSRMLRGFLDGLAAHLTPNGEGWLILSDFAEHLGLR 60
           LIVCNPPW+PAKP+S +E A+YDP+S ML  FL     HL P+GE  LI+SD AEHL LR
Sbjct: 219 LIVCNPPWLPAKPTSAVESALYDPESAMLAAFLRDAPKHLNPDGEIRLIISDLAEHLHLR 278

Query: 61  SRAELQAMFDKAGLRVALKQDIKPRHPRSSDAEDPLHAARVKEVTSLWVLK 111
               L   F +AGLRVA     KP H +++D  +PL  AR +E T L+ LK
Sbjct: 279 PSDFLDKAFAQAGLRVADVLKTKPVHKKAADPNNPLAFARNRETTFLYRLK 329