BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0020.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2500 [S] COG2259 Predicted membrane protein Rso Ralstonia sol...   102   2e-22
SMb20597 [S] COG2259 Predicted membrane protein Sme Sinorhizobiu...    86   1e-17
ZyphA [S] COG2259 Predicted membrane protein EcZ Escherichia col...    81   5e-16
ECs3409 [S] COG2259 Predicted membrane protein Ecs Escherichia c...    81   5e-16
yphA [S] COG2259 Predicted membrane protein Eco Escherichia coli...    81   6e-16

>RSc2500 [S] COG2259 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 136

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           +GRVL+  LF+ISG  K+ GFS TVGYMG++G P+P +A IV +++E G G+ LL G  +
Sbjct: 15  LGRVLMMLLFLISGWGKLTGFSATVGYMGTVGAPMPMLAAIVAVIMEFGVGIALLIGF-W 73

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP ALL+A+F +G  L AH +W V+ A     +  F KN+S++GGL+++
Sbjct: 74  TRPLALLMALFVLGTALIAHTYWNVEGAMQTANMVQFYKNLSIMGGLILL 123


>SMb20597 [S] COG2259 Predicted membrane protein Sme Sinorhizobium meliloti
          Length = 139

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 75/110 (68%), Gaps = 6/110 (5%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           +GR+LLA++F++SG  K+   SGT+GY+ S G+P+P VA  V + VE+GAG+LL+ G R 
Sbjct: 14  IGRLLLAAMFILSGFGKLGDPSGTIGYIASAGLPLPPVAYAVALAVEIGAGILLVLGYR- 72

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
           AR  AL++A FT+ + +  H  +A      Q Q+ HF+KN+++ GG L +
Sbjct: 73  ARWVALILAAFTLASAIGFHTDFAD-----QNQMIHFMKNLAITGGFLQI 117


>ZyphA [S] COG2259 Predicted membrane protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 155

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           + R+ +  +F+I G  K++GF GTV YM SLG P+P +A I+ +++EV A +L++ G  F
Sbjct: 34  IARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGF-F 92

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP A+L   +T+G  +  H +W +   A+   + +F KNVS+ G  L++
Sbjct: 93  TRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLL 142


>ECs3409 [S] COG2259 Predicted membrane protein Ecs Escherichia coli O157:H7
          Length = 155

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           + R+ +  +F+I G  K++GF GTV YM SLG P+P +A I+ +++EV A +L++ G  F
Sbjct: 34  IARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGF-F 92

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP A+L   +T+G  +  H +W +   A+   + +F KNVS+ G  L++
Sbjct: 93  TRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLL 142


>yphA [S] COG2259 Predicted membrane protein Eco Escherichia coli K12
          Length = 164

 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 10  VGRVLLASLFVISGIFKIIGFSGTVGYMGSLGIPVPTVAVIVTILVEVGAGLLLLTGSRF 69
           + R+ +  +F+I G  K++GF GTV YM SLG P+P +A I+ +++EV A +L++ G  F
Sbjct: 43  IARIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGF-F 101

Query: 70  ARPAALLIAIFTVGATLAAHRFWAVDAAAMQGQLTHFLKNVSLIGGLLIV 119
            RP A+L   +T+G  +  H +W +   A+   + +F KNVS+ G  L++
Sbjct: 102 TRPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLL 151