BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0015.p         (213 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr8412 [GEPR] COG0477 Permeases of the major facilitator superf...   116   4e-26
AGc2168 [GEPR] COG0477 Permeases of the major facilitator superf...   110   3e-24
SMc01779 [GEPR] COG0477 Permeases of the major facilitator super...    98   1e-20
RSc2316 [GEPR] COG0477 Permeases of the major facilitator superf...    87   4e-17
PA1848 [GEPR] COG0477 Permeases of the major facilitator superfa...    83   4e-16

>mlr8412 [GEPR] COG0477 Permeases of the major facilitator superfamily Mlo
           Mesorhizobium loti
          Length = 405

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 1/189 (0%)

Query: 24  RNARILAICQGLFTCAISIDLTLTALTG-YQLAPDKSLATLPFALITVAGAVVTWFAAFL 82
           R A ILA  Q +   A  I +++ AL G Y L  DKSLAT P     +  A+    AA +
Sbjct: 14  RTALILAASQAIIGSAAPIAISMGALAGQYLLGADKSLATAPITGFNIGVALGALPAAAI 73

Query: 83  IQRLGRRLSFALGALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFAQYYRLAAADA 142
           I+RLG+R  F  G +  A+GG I+  ++FHG FW F      +G+  AF Q +R AAAD 
Sbjct: 74  IRRLGQRGGFMTGTVVTALGGLIATLALFHGSFWLFAFALLVIGIGGAFVQQFRFAAADN 133

Query: 143 VSAEFKSRAISTVLTGGVIAAVLGPALASWSKDLFPTALFSGAYLMVALLSLLSMIVLLV 202
              +FK+RAIS VL GG+I A+LGP +  ++++L    +F+G++  + +L+ +  ++L  
Sbjct: 134 APPQFKARAISFVLAGGIITAILGPQIVIFTRELLAPVMFAGSFAAIPVLAAVGAVILSF 193

Query: 203 FYRDTEAVG 211
                 A G
Sbjct: 194 LRIPVRATG 202


>AGc2168 [GEPR] COG0477 Permeases of the major facilitator superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 407

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 1/178 (0%)

Query: 24  RNARILAICQGLFTCAISIDLTLTALTGYQL-APDKSLATLPFALITVAGAVVTWFAAFL 82
           RN  +L + Q +   A  +  ++ AL GYQL   DKSLAT P     +  A+     A  
Sbjct: 18  RNVFLLTMAQAIMGSAAPLSFSVGALAGYQLLGADKSLATAPLTGFNIGVALGAICVAAA 77

Query: 83  IQRLGRRLSFALGALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFAQYYRLAAADA 142
            + LGR+  F +GAL  +IGG I+  ++F   FW F +G   +G+   F Q  R AAADA
Sbjct: 78  SRFLGRKAGFMVGALMCSIGGGIAAVALFRSDFWLFAVGLLLIGISGGFTQKIRFAAADA 137

Query: 143 VSAEFKSRAISTVLTGGVIAAVLGPALASWSKDLFPTALFSGAYLMVALLSLLSMIVL 200
             + +K++AIS +L GG+I+A++GP LA + KDL     F+GA++ +  L L+S+ +L
Sbjct: 138 SPSFYKAKAISWILAGGIISAIVGPQLAIFGKDLLAPVTFAGAFIALVPLGLVSIAIL 195


>SMc01779 [GEPR] COG0477 Permeases of the major facilitator superfamily Sme
           Sinorhizobium meliloti
          Length = 408

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 5/182 (2%)

Query: 24  RNARILAICQGLFTCAISIDLTLTALTGYQL-APDKSLATLPFALITVAGAVVTWFAAFL 82
           RN ++L + Q L      I   +  + G+QL   DKSLAT P     +  A+     A L
Sbjct: 17  RNVQLLTVAQALLGVVGPISFAVGGVAGHQLLGEDKSLATAPLTAYNLGMALGVVLVAVL 76

Query: 83  IQRLGRRLSFALGALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFAQYYRLAAADA 142
            + +GRR +F  GA   A+GG ++  ++F   FW F  G A +G    F Q  R AAADA
Sbjct: 77  SRLVGRRFAFIAGASIAALGGVLATAALFRESFWFFACGLAVLGASNGFTQKLRFAAADA 136

Query: 143 VSAEFKSRAISTVLTGGVIAAVLGPALASWSKDLFPTALFSGAYLMVALLSLLSMIVLLV 202
             + +K++AIS +L GG+++A+LGP +  ++ D F    F+GA+  VAL+ +   IV L 
Sbjct: 137 SPSFYKAKAISWILGGGIVSAILGPQIVIFAGDYFAPVWFAGAF--VALVPVC--IVALF 192

Query: 203 FY 204
           F+
Sbjct: 193 FF 194


>RSc2316 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 399

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 91/172 (52%)

Query: 29  LAICQGLFTCAISIDLTLTALTGYQLAPDKSLATLPFALITVAGAVVTWFAAFLIQRLGR 88
           LA  Q L     ++     A+ G+ LAP  +LAT+P ++  V  A  T     + +R GR
Sbjct: 13  LASSQALAGANSTVIFATGAIIGHMLAPSPALATVPVSIFVVGMAAATLPVGVVTRRYGR 72

Query: 89  RLSFALGALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFAQYYRLAAADAVSAEFK 148
           + S   G++ G   G ++  ++    F  FC+     G + A    YR AAA+ V AE +
Sbjct: 73  KTSALFGSVCGVTVGLLAALALVIQSFSLFCVAMLFGGAYAAVVLTYRFAAAECVPAEHR 132

Query: 149 SRAISTVLTGGVIAAVLGPALASWSKDLFPTALFSGAYLMVALLSLLSMIVL 200
           +RA+STVL GGV A VLGP L + + +L+    ++  YL  A  ++LS IVL
Sbjct: 133 ARAMSTVLAGGVAAGVLGPQLVTATMNLWSPHAYAVTYLASAGTAVLSAIVL 184


>PA1848 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 389

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 90/140 (64%), Gaps = 1/140 (0%)

Query: 36  FTCAISIDLTLTALTGYQLAPDKSLATLPFALITVAGAVVTWFAAFLIQRLGRRLSFALG 95
           ++C++ I +TLTAL G QLAP  SLATLP AL+ +   +     +  +QR GRR    LG
Sbjct: 19  WSCSL-IGITLTALVGVQLAPLNSLATLPLALLVLGNLLAVQPLSHFMQRHGRRPGLMLG 77

Query: 96  ALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFAQYYRLAAADAVSAEFKSRAISTV 155
           A  G +GG +    V+ G F  FC+G  G+GV+QA A YYR AA +AV A  K RA + V
Sbjct: 78  AGGGVLGGLVCAAGVWTGDFLWFCLGALGIGVYQASAMYYRFAALEAVDAGRKGRASAYV 137

Query: 156 LTGGVIAAVLGPALASWSKD 175
           L GGV+AA+L P+LA WS++
Sbjct: 138 LAGGVLAALLAPSLALWSRN 157