BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0014.p         (176 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   129   3e-30
AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archae...   118   7e-27
ECs0982 [Q] COG1335 Amidases related to nicotinamidase Ecs Esche...    70   3e-12
ycaC [Q] COG1335 Amidases related to nicotinamidase Eco Escheric...    70   3e-12
PA1202 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    68   1e-11

>PA3846 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 180

 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 9/177 (5%)

Query: 1   MLMNANESALLIIDVQEKLMPAIHDGANVLTQNIRLATIASLLGLPVIATEQTPEKLGPN 60
           ML+ A  S LL++D+QE+L+PAI DG  ++  +  L  +A  L +PV+A+EQ  + LGP 
Sbjct: 1   MLIRAATSTLLVVDIQERLLPAIDDGPALVEYSQWLLRVARALDVPVLASEQYSKGLGPT 60

Query: 61  HPDIKRLCDRT--LAKTHFDACVDGLPATFLPAC----KEVVVSGCEAHVCMLQTAMTLL 114
              ++   + T  L K  F A  DG     L A     ++ VV G EAHVC+LQT + LL
Sbjct: 61  VAALRDELEPTQILEKLDFSAAADG---ALLRAPGGDRRQFVVCGSEAHVCVLQTVLDLL 117

Query: 115 QNGYRVWVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRHPLFREV 171
             G  V+VV +A GSR+ +D+  A  R+ QAGA +V+ EMVAFEWM  +    FRE+
Sbjct: 118 GRGREVFVVEEAIGSRRPSDKALAVERMRQAGAMIVSREMVAFEWMERAGSDRFREI 174


>AF2335 [Q] COG1335 Amidases related to nicotinamidase Afu Archaeoglobus
           fulgidus
          Length = 170

 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 4/170 (2%)

Query: 9   ALLIIDVQEKLMPAIHDGANVLTQNIRLATIASLLGLPVIATEQTPEKLGPNHPDIKRLC 68
           AL+++DVQEKL P I     +L + ++L      L  PVI TEQ   KLG    ++    
Sbjct: 2   ALVVVDVQEKLAPHIEGIEEMLKRTVKLVKAIVALKQPVIFTEQI--KLGKTVDELAEYA 59

Query: 69  DRTLAKTHFDACVDGLPATFLPACK--EVVVSGCEAHVCMLQTAMTLLQNGYRVWVVTDA 126
           +  + K+ F    D      +   K  +V+++G EAH+C+LQTA+ + + GY V+VV D 
Sbjct: 60  EEPIVKSTFSCYKDENFRRKIEELKPEKVILAGIEAHICVLQTAIDMKRAGYDVYVVADC 119

Query: 127 TGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRHPLFREVLKLIK 176
           TGSRK  D++ A  RLA  G  L T E + +E +  + HP FRE+L+++K
Sbjct: 120 TGSRKAEDKEIALMRLAGEGIKLTTWESIVYELLESAEHPAFREILQIVK 169


>ECs0982 [Q] COG1335 Amidases related to nicotinamidase Ecs Escherichia coli
           O157:H7
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 24/179 (13%)

Query: 3   MNANESALLIIDVQEKLMPAIHD-GANVLTQNI-RLATIASLLGLPVIATEQTPEKLGPN 60
           ++ N++A+L++D Q  L+  + D   +    N+  L  +A    LP I T  T  + GPN
Sbjct: 8   LDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILT--TSFETGPN 65

Query: 61  HPDIKRLCDRTLAKTHF-DACVDGLPAT--------FLPACK-----EVVVSGCEAHVCM 106
            P +  L      K  F DA     P          F+ A K     +++++G    VC+
Sbjct: 66  GPLVPEL------KAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCV 119

Query: 107 LQTAMTLLQNGYRVWVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRH 165
              A++ ++ G+ V+VVTDA+G+     R +A+ R++QAGA L+T   VA E  RD R+
Sbjct: 120 AFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDWRN 178


>ycaC [Q] COG1335 Amidases related to nicotinamidase Eco Escherichia coli
           K12
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 3   MNANESALLIIDVQEKLMPAIHD-GANVLTQNI-RLATIASLLGLPVIATEQTPEKLGPN 60
           ++ N++A+L++D Q  L+  + D   +    N+  L  +A    LP I T  T  + GPN
Sbjct: 8   LDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILT--TSFETGPN 65

Query: 61  HPDIKRLCDRTLAKTHFDACVDGLPA----TFLPACK-----EVVVSGCEAHVCMLQTAM 111
            P +  L  +    T + A    + A     F+ A K     +++++G    VC+   A+
Sbjct: 66  GPLVPELKAQ-FPDTPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPAL 124

Query: 112 TLLQNGYRVWVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRH 165
           + ++ G+ V+VVTDA+G+     R +A+ RL+QAGA L+T   VA E  RD R+
Sbjct: 125 SAIEEGFDVFVVTDASGTFNEITRHSAWDRLSQAGAQLMTWFGVACELHRDWRN 178


>PA1202 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 205

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 18/176 (10%)

Query: 3   MNANESALLIIDVQEKLMPAIHDGANVLTQN--IRLATIASLLGLPVIATEQTPEKLGPN 60
           ++ N++A+L +D Q  L+  + D +    +N  + LA IA    LP I T  T  + GPN
Sbjct: 8   LDKNDAAVLFVDHQAGLLSLVRDFSPDEFKNNVLALADIARFFNLPTILT--TSFEDGPN 65

Query: 61  HPDIKRLCDRTLAKTHF-----------DACVDGLPATFLPACKEVVVSGCEAHVCMLQT 109
            P +  L +      +            +  V  + AT     K+++++G    VC+   
Sbjct: 66  GPLVPELKEMFPQAPYIARPGNINAWDNEDFVKAVKAT---GKKQLIIAGVVTDVCVAFP 122

Query: 110 AMTLLQNGYRVWVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRH 165
            ++ L+ G+ V+VVTDA+G+     RDAA+ R+  AGA L+    V  E  RD R+
Sbjct: 123 TLSALEEGFDVFVVTDASGTFNPVVRDAAWARMTAAGAQLMNWFSVGCELHRDWRN 178