BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0008.p         (289 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2390 [H] COG1492 Cobyric acid synthase Rso Ralstonia solanace...   356   3e-98
PA1277 [H] COG1492 Cobyric acid synthase Pae Pseudomonas aeruginosa   332   9e-91
VCA0727 [H] COG1492 Cobyric acid synthase Vch Vibrio cholerae         300   4e-81
SMc04309 [H] COG1492 Cobyric acid synthase Sme Sinorhizobium mel...   215   1e-55
CC1751 Non COG                                                        210   3e-54

>RSc2390 [H] COG1492 Cobyric acid synthase Rso Ralstonia solanacearum
          Length = 495

 Score =  356 bits (914), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 211/283 (74%), Gaps = 5/283 (1%)

Query: 1   VINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLHLDAEDAVASSQSAKG--TFRVV 58
           VINRFRGD+SLL PGLDWL  +TGKPV  VLPYL GLHLDAEDAV ++QSA      RVV
Sbjct: 203 VINRFRGDLSLLTPGLDWLTAQTGKPVFGVLPYLQGLHLDAEDAVQTAQSAASGEVLRVV 262

Query: 59  VPVLPRISNHTDFDALRAHPEVDLQFIGPGRPIPPADLIILPGSKNTCNDLAWLRQQGWP 118
           +PVLPRISNHTDFDALRAHP+VD++ +GPGRPIPPADL+ILPGSK+   DLAWLR  GW 
Sbjct: 263 IPVLPRISNHTDFDALRAHPQVDVRMVGPGRPIPPADLVILPGSKSVQADLAWLRAHGWD 322

Query: 119 DAIRKHLRYGGKVIGICGGFQMLGASVDDPHGVEGAPGSMEGLGLLDMATELTQKKQLLQ 178
            AI +HLRYGGK+IGICGG QMLG  + DP G+EG PGS++GLG LD  T L   KQL Q
Sbjct: 323 AAIARHLRYGGKLIGICGGMQMLGRRLRDPLGLEGRPGSLDGLGYLDFETTLAPAKQLRQ 382

Query: 179 VSGHCEFGAGHVPVSGYEIHMGVSAGTALQRPAFHV-EGRPEGARSADDQILGSYLHGMF 237
           V G      G   ++GYEIHMGV+ G AL RPA  + +GR +GA SAD QIL +YLHG+F
Sbjct: 383 VRG--TLADGGAALAGYEIHMGVTEGPALARPAVRLDDGRTDGAVSADGQILATYLHGLF 440

Query: 238 DTPQAFAALLEWAGLNGAAAVDLNQLREESLERVADATQPLLD 280
           D P+A  ALL WAG+  A A D   LRE SLER+AD  +  LD
Sbjct: 441 DAPEACRALLAWAGVREARAQDYAALREASLERLADTLRAHLD 483


>PA1277 [H] COG1492 Cobyric acid synthase Pae Pseudomonas aeruginosa
          Length = 490

 Score =  332 bits (850), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 168/283 (59%), Positives = 207/283 (73%), Gaps = 5/283 (1%)

Query: 1   VINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLHLDAEDAVASSQSAKG--TFRVV 58
           VINRFRGDI+LLQPGLDWLE RTGKPVL VLPY+  LHL+AEDA+ + Q+AK     +VV
Sbjct: 197 VINRFRGDIALLQPGLDWLEARTGKPVLGVLPYVSDLHLEAEDAIDTRQAAKVGPRLKVV 256

Query: 59  VPVLPRISNHTDFDALRAHPEVDLQFIGPGRPIPPADLIILPGSKNTCNDLAWLRQQGWP 118
           VPVLPRISNHTDFD LR HP+V+L F+GPG+ +P ADLI+LPGSK+   DLA LR++GW 
Sbjct: 257 VPVLPRISNHTDFDPLRLHPQVELSFVGPGQALPSADLIVLPGSKSVRADLAALRERGWD 316

Query: 119 DAIRKHLRYGGKVIGICGGFQMLGASVDDPHGVEGAPGSMEGLGLLDMATELTQKKQLLQ 178
           +AI +HLRYGG+++GICGG QMLG  + DP G+EGA GS  GLGLL + T L   KQL  
Sbjct: 317 EAILRHLRYGGRLLGICGGLQMLGERLHDPLGLEGAAGSSAGLGLLALETTLEADKQLRN 376

Query: 179 VSGHCEFGAGHVPVSGYEIHMGVSAGTALQRPAFHV-EGRPEGARSADDQILGSYLHGMF 237
           V G         P+SGYEIH GV+ G AL RPA  + +GR +GARS D  ++G+YLHG+F
Sbjct: 377 VQGRLSL--EDAPLSGYEIHAGVTRGEALARPAVVLDDGRADGARSVDGNVMGTYLHGLF 434

Query: 238 DTPQAFAALLEWAGLNGAAAVDLNQLREESLERVADATQPLLD 280
           ++  A +ALL WAGL    AVD   LRE  +ER+AD  +  LD
Sbjct: 435 ESTAACSALLRWAGLREVQAVDYQALRERDIERLADLVERHLD 477


>VCA0727 [H] COG1492 Cobyric acid synthase Vch Vibrio cholerae
          Length = 484

 Score =  300 bits (767), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 155/283 (54%), Positives = 189/283 (66%), Gaps = 3/283 (1%)

Query: 1   VINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLHLDAEDAVASSQ--SAKGTFRVV 58
           VINRFRGDI LLQ GLDWLEQ+TGKPV+ VLPYLHG  L+AEDA+A+ Q  SA    RV 
Sbjct: 194 VINRFRGDIGLLQSGLDWLEQKTGKPVIGVLPYLHGFDLEAEDAIAAQQNLSADRQLRVA 253

Query: 59  VPVLPRISNHTDFDALRAHPEVDLQFIGPGRPIPPADLIILPGSKNTCNDLAWLRQQGWP 118
           VPV  RISNHTDFD LR +P +D +++G G  +  ADLIILPGSK+T  DLA+LR QGW 
Sbjct: 254 VPVFTRISNHTDFDPLRLNPNIDFRYVGQGESLSGADLIILPGSKSTRADLAYLRSQGWD 313

Query: 119 DAIRKHLRYGGKVIGICGGFQMLGASVDDPHGVEGAPGSMEGLGLLDMATELTQKKQLLQ 178
             I +HLR GGKV+GICGGFQMLG  V DP G+EG  GS EGLGL  M TELT +K+L  
Sbjct: 314 KEILRHLRLGGKVMGICGGFQMLGEWVHDPLGIEGEAGSSEGLGLFAMQTELTAEKRLTN 373

Query: 179 VSGHCEFGAGHVPVSGYEIHMGVSAGTALQR-PAFHVEGRPEGARSADDQILGSYLHGMF 237
           V GH       V   GYEIH G S+  A Q+ P    +G  +G  S  +Q  G+YLHG+F
Sbjct: 374 VKGHLTLDGQTVAAQGYEIHAGHSSWAADQKSPIILSDGSLDGLVSDCNQGFGTYLHGIF 433

Query: 238 DTPQAFAALLEWAGLNGAAAVDLNQLREESLERVADATQPLLD 280
           D P+    + +WAG     A D    +E +++R+ADA +  LD
Sbjct: 434 DRPETALRICQWAGAKEIEAYDHRAAQERAIDRIADAIEQHLD 476


>SMc04309 [H] COG1492 Cobyric acid synthase Sme Sinorhizobium meliloti
          Length = 484

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/286 (40%), Positives = 175/286 (61%), Gaps = 10/286 (3%)

Query: 1   VINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGL-HLDAEDAVASSQSAKG---TFR 56
           +IN+FRGD++L   G+  + Q TG P   V+P+L     L AED+V   +  +G     +
Sbjct: 194 LINKFRGDVTLFDDGIASVRQFTGWPCFGVVPWLKSAGRLPAEDSVVLERLTRGGGKALK 253

Query: 57  VVVPVLPRISNHTDFDALRAHPEVDLQFIGPGRPIPP-ADLIILPGSKNTCNDLAWLRQQ 115
           V VPVL RI+N  D D L A P+VD+ F+ PG P+P  A LI++PGSK+T  DL   R+Q
Sbjct: 254 VAVPVLSRIANFDDLDPLAAEPDVDIVFVRPGTPLPDDAGLIVIPGSKSTIADLDDFRRQ 313

Query: 116 GWPDAIRKHLRYGGKVIGICGGFQMLGASVDDPHGVEGAPGSMEGLGLLDMATELTQKKQ 175
           GW   + +H+R GG+V+GICGG+QMLG+ V DP G+EG    +EGLGLL + TE+  +K 
Sbjct: 314 GWDRDLDRHMRRGGRVVGICGGYQMLGSRVADPLGIEGGKREIEGLGLLSVETEMAPEKT 373

Query: 176 LLQVSGHC-EFGAGHVPVSGYEIHMGVSAGTALQRPAFHVEGRPEGARSADDQILGSYLH 234
           +        E+    V + GYEIH+G + G    R    ++GRP+GA SAD +++G+YLH
Sbjct: 374 VRNSRAWSREY---DVALEGYEIHLGKTTGADCSRAPVEIDGRPDGAMSADGRVMGTYLH 430

Query: 235 GMFDTPQAFAALLEWAGLNGAAAVDLNQLREESLERVADATQPLLD 280
           G+F +    +ALL+  G+ G    +  +  + +L+ +A   + +LD
Sbjct: 431 GLFGSDAYRSALLKSFGIEGGGG-NYRRSVDAALDEIALELETVLD 475


>CC1751 Non COG
          Length = 484

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 121/244 (49%), Positives = 157/244 (64%), Gaps = 11/244 (4%)

Query: 1   VINRFRGDISLLQPGLDWLEQRTGKPVLAVLPYLHGLH-LDAEDAV---ASSQSAKGTFR 56
           +IN+FRGD +L   G   + +RTG   L + P+L     L AEDAV   A S    G  R
Sbjct: 193 LINKFRGDPALFDDGRRAIVERTGWADLGMAPWLAAARRLPAEDAVVLDARSAGRGGKVR 252

Query: 57  VVVPVLPRISNHTDFDALRAHPEVDLQFIGPGRPIP-PADLIILPGSKNTCNDLAWLRQQ 115
           +VVP+L RI+N  +FDALRA P V+  F+ PG  +P  ADL+ILPG+K T  DL ++R Q
Sbjct: 253 IVVPMLSRIANFDEFDALRAEPGVEFAFVPPGSALPGDADLVILPGTKATRADLDFVRAQ 312

Query: 116 GWPDAIRKHLRYGGKVIGICGGFQMLGASVDDPHGVEGAPGSMEGLGLLDMATELTQKKQ 175
           GW   +R HLR GG+V+GICGG+QMLG  V DP GVEGAPG+ EGLGLLD+ T +T  K 
Sbjct: 313 GWDIDLRAHLRRGGRVLGICGGYQMLGRRVADPDGVEGAPGTSEGLGLLDVETVMTGDKT 372

Query: 176 LLQVSGHCEFGAGHVPVSGYEIHMGVSAGTALQRPAFHVE-GRPEGARSADDQILGSYLH 234
           L  V+G  +   G     GYE+H+G ++G A  RP    + G P+GA SAD +I G Y+H
Sbjct: 373 LRPVTGRLD---GCARFEGYEMHVGRTSGAA--RPMLIFDTGEPDGAVSADGRISGCYVH 427

Query: 235 GMFD 238
           G+FD
Sbjct: 428 GLFD 431