BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0007.p         (205 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2390 [H] COG1492 Cobyric acid synthase Rso Ralstonia solanace...   218   7e-57
PA1277 [H] COG1492 Cobyric acid synthase Pae Pseudomonas aeruginosa   211   9e-55
VCA0727 [H] COG1492 Cobyric acid synthase Vch Vibrio cholerae         207   1e-53
STM2019 [H] COG1492 Cobyric acid synthase Sty Salmonella typhimu...   171   1e-42
MTH787 [H] COG1492 Cobyric acid synthase Mth Methanothermobacter...   169   3e-42

>RSc2390 [H] COG1492 Cobyric acid synthase Rso Ralstonia solanacearum
          Length = 495

 Score =  218 bits (555), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 116/145 (80%), Positives = 131/145 (90%)

Query: 4   PFHTLMVQGTTSDAGKSTVVAALCRLLHRQGVKVAPFKPQNMALNSAVTSDGGEIGRAQA 63
           P  TLM+QGTTSDAGKST+VA LCR+ HR GV+VAPFKPQNMALNSAVT+DGGEIGRAQA
Sbjct: 10  PRGTLMIQGTTSDAGKSTLVAGLCRIAHRAGVRVAPFKPQNMALNSAVTADGGEIGRAQA 69

Query: 64  LQAQAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTSAMAAVLESYE 123
           LQAQAAG+AP  DMNPVLLKP+SDTGAQVI+HG+ R D+NAR YH YK +AMAAVL S+ 
Sbjct: 70  LQAQAAGLAPTVDMNPVLLKPNSDTGAQVIIHGRPRGDLNARAYHDYKPTAMAAVLASHG 129

Query: 124 RLRAQYEVVLVEGAGSPAEINLRAR 148
           RLRAQY++VLVEGAGSPAE+NLRAR
Sbjct: 130 RLRAQYDLVLVEGAGSPAEVNLRAR 154


>PA1277 [H] COG1492 Cobyric acid synthase Pae Pseudomonas aeruginosa
          Length = 490

 Score =  211 bits (537), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 118/141 (83%)

Query: 7   TLMVQGTTSDAGKSTVVAALCRLLHRQGVKVAPFKPQNMALNSAVTSDGGEIGRAQALQA 66
           TLMVQGTTSDAGKST+V ALCR L R+GV V PFKPQNMALNSAVT+DGGEIGRAQA+QA
Sbjct: 7   TLMVQGTTSDAGKSTLVTALCRWLARRGVAVVPFKPQNMALNSAVTADGGEIGRAQAVQA 66

Query: 67  QAAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTSAMAAVLESYERLR 126
           QA  +APHTDMNPVLLKP++D GAQVI+HG+    M+A  YH YK  AM AVL S+ RL 
Sbjct: 67  QACRLAPHTDMNPVLLKPNTDIGAQVIIHGRAVTSMDAAAYHDYKRVAMEAVLASHGRLA 126

Query: 127 AQYEVVLVEGAGSPAEINLRA 147
           A Y VV+VEGAGSPAEINLRA
Sbjct: 127 AAYRVVMVEGAGSPAEINLRA 147


>VCA0727 [H] COG1492 Cobyric acid synthase Vch Vibrio cholerae
          Length = 484

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 130/185 (70%), Gaps = 2/185 (1%)

Query: 8   LMVQGTTSDAGKSTVVAALCRLLHRQGVKVAPFKPQNMALNSAVTSDGGEIGRAQALQAQ 67
           LMVQGTTSDAGKS +VA LCR+L R+G++V PFKPQNMALNSAVT DGGEIGRAQA+QAQ
Sbjct: 5   LMVQGTTSDAGKSVLVAGLCRVLARRGIQVCPFKPQNMALNSAVTPDGGEIGRAQAVQAQ 64

Query: 68  AAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTSAMAAVLESYERLRA 127
           A GIAP   MNPVLLKP+SDTGAQVI+ G+  ++M A  YH YK  AM  V++S++RL+ 
Sbjct: 65  ACGIAPSVHMNPVLLKPNSDTGAQVILQGRALSNMEANAYHDYKKVAMDTVMDSFQRLQQ 124

Query: 128 QYEVVLVEGAGSPAEINLRARARARAXARATSPTWVSPKRSIARSCWWP--TSTAAACSP 185
           +YE +++EGAGSPAEINLR    A       +   V     I R   +     T A  S 
Sbjct: 125 EYEAIMIEGAGSPAEINLRENDIANMGFAEKADVPVIIVADIDRGGVFAHLYGTLALLSE 184

Query: 186 TSQAR 190
           + QAR
Sbjct: 185 SEQAR 189


>STM2019 [H] COG1492 Cobyric acid synthase Sty Salmonella typhimurium LT2
          Length = 506

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 102/141 (72%)

Query: 8   LMVQGTTSDAGKSTVVAALCRLLHRQGVKVAPFKPQNMALNSAVTSDGGEIGRAQALQAQ 67
           +M+QGT SD GKS + A LCR+ ++ G++ APFK QNMALNS +T DG E+GRAQ  QA+
Sbjct: 5   VMLQGTASDVGKSVLAAGLCRIFYQDGLRTAPFKSQNMALNSGITPDGKEMGRAQIFQAE 64

Query: 68  AAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYHRYKTSAMAAVLESYERLRA 127
           AAGI P   MNPVLLKP+SD  AQV++ GKV  +M+A  YH YK      +L  Y  L  
Sbjct: 65  AAGITPDVRMNPVLLKPTSDRQAQVVLMGKVATNMDAVSYHDYKPRLREQILAVYNSLAQ 124

Query: 128 QYEVVLVEGAGSPAEINLRAR 148
           +Y+V+++EGAGSPAEINLR R
Sbjct: 125 EYDVIVLEGAGSPAEINLRDR 145


>MTH787 [H] COG1492 Cobyric acid synthase Mth Methanothermobacter
           thermautotrophicus
          Length = 514

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 109/145 (75%), Gaps = 1/145 (0%)

Query: 8   LMVQGTTSDAGKSTVVAALCRLLHRQGVKVAPFKPQNMALNSAVTSDGGEIGRAQALQAQ 67
           +MVQGT+S AGKS +VAALCR+  R+G +VAPFK QNM+LNS  T++  EI  AQ LQA+
Sbjct: 16  IMVQGTSSSAGKSVMVAALCRIFSRRGYRVAPFKSQNMSLNSFTTAENREIAVAQVLQAE 75

Query: 68  AAGIAPHTDMNPVLLKPSSDTGAQVIVHGKVRADMNARDYH-RYKTSAMAAVLESYERLR 126
           AAGI P   MNPVLLKP  D  +QVIVHG+   +MN +DY   ++ +A+ A+ ES E L+
Sbjct: 76  AAGIEPSHHMNPVLLKPKEDFTSQVIVHGRPAGNMNFQDYQTEFRDTALEAIRESLEYLK 135

Query: 127 AQYEVVLVEGAGSPAEINLRARARA 151
           ++YE++++EGAGSPAEIN+R R  A
Sbjct: 136 SRYELIVIEGAGSPAEINMRDRDLA 160