BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0006.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1953 [GER] COG0697 Permeases of the drug/metabolite transport...    82   7e-16
BS_yetK [GER] COG0697 Permeases of the drug/metabolite transport...    79   7e-15
BH0390 [GER] COG0697 Permeases of the drug/metabolite transporte...    75   5e-14
SMc00428 [GER] COG0697 Permeases of the drug/metabolite transpor...    62   8e-10

>RSc1953 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 336

 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 1/110 (0%)

Query: 17  SMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPANEAPLTPRTRLLVFLE 76
           +M++VG+ V   K + A +PV L A LRF I  A M  W  +P+    +T      +FL+
Sbjct: 28  AMALVGSNVGFGKSIVAVMPVMLFALLRFVIAVACMAPW-YRPSRMRRVTRGEWTNLFLQ 86

Query: 77  SFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLRERIGAR 126
           +  G F FT+ M++GV +TSA++AG+I S IPA VAL+SW+ LRE+   R
Sbjct: 87  ALFGTFGFTLLMLNGVRLTSALAAGIITSTIPATVALLSWLVLREKPSGR 136


>BS_yetK [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Bsu Bacillus subtilis
          Length = 330

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 10  AYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPANEAP-LTPR 68
           AYV LA +M++VG+ V + K +   +PVFL + LRF I +  +L  L       P LT +
Sbjct: 29  AYVSLAAAMAIVGSSVVVGKLMVERIPVFLSSGLRFLIASVVLLMLLFCIEKGFPALTKK 88

Query: 69  TRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLRERIGARXA 128
              ++ ++SF G FLF+IC++ GV  T+   +G++ S  P ++ ++S+  LRE+I  +  
Sbjct: 89  DVFVLLVQSFTGVFLFSICLLYGVQYTTGTESGILTSTTPMLIGILSFFLLREKI-EKKT 147

Query: 129 LVGVL 133
           L+G+L
Sbjct: 148 LIGIL 152


>BH0390 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Bha Bacillus halodurans
          Length = 311

 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 80/133 (60%), Gaps = 4/133 (3%)

Query: 1   MNYTPGRLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPA 60
           MN T   + A + +  +M +VG+ V   K L  + PVFL + LRF I A  ++  L K  
Sbjct: 1   MNQT---ISAQLKIMFAMVIVGSSVVAGKMLVESFPVFLASELRFLIAALILVPMLLKKE 57

Query: 61  NEAPLTPRTRLLVFLESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLR 120
                + +   ++FL++  G FLF+I M+ G+  T+A+  G+IMS +PAVVALM++I L+
Sbjct: 58  GIPTFSKKEVGILFLQALSGVFLFSIFMLYGLMYTTAMEGGIIMSTLPAVVALMAFITLK 117

Query: 121 ERIGARXALVGVL 133
           E++  R  ++G+L
Sbjct: 118 EKL-TRLTIIGIL 129


>SMc00428 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Sme Sinorhizobium meliloti
          Length = 298

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)

Query: 7   RLMAYVCLALSMSMVGAYVALTKPLAAALPVFLLAWLRFGIGAAAMLRWLKKPANEAPLT 66
           ++  YV L+L+M +VG+ V  +K +AA LP F    LRF I     L  ++      P  
Sbjct: 4   QVQGYVFLSLAMVLVGSTVIASKIIAAGLPPFTATALRFAIAFPLFLGLMRATGASWPKL 63

Query: 67  PRTRLLVFL-ESFLGNFLFTICMISGVSMTSAVSAGVIMSVIPAVVALMSWIFLRER 122
           P++  LV L ++  G+  +T  +ISG+ +TSA  AGVI+  +P V A ++ + L ER
Sbjct: 64  PKSDWLVLLFQAGAGSVGYTTLLISGLKLTSAADAGVIIGTLPVVSAAIAIMVLGER 120