BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0028.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2843 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Rso Rals...   115   2e-26
NMB0423 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Nme Neis...   113   8e-26
NMA2061 [M] COG0773 UDP-N-acetylmuramate-alanine ligase NmA Neis...   113   1e-25
PM0143 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Pmu Paste...    98   6e-21
VC2400 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Vch Vibri...    96   2e-20

>RSc2843 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Rso Ralstonia
           solanacearum
          Length = 483

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 61/70 (87%)

Query: 1   VLAFQPHRYTRTRDLFEDFVKVLSSTDVLVLAEVYAAGEQPIVAADGRSLAHALRVAGKV 60
           VLAFQPHR+TRTRD FEDF+KVL + D L+LAEVYAAGE PIVAADGR+L  ALRVAGK+
Sbjct: 363 VLAFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVYAAGEPPIVAADGRALTRALRVAGKI 422

Query: 61  EPIFVEDIAD 70
           EP+FVE I D
Sbjct: 423 EPVFVEQIED 432


>NMB0423 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Nme Neisseria
           meningitidis MC58
          Length = 469

 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 1   VLAFQPHRYTRTRDLFEDFVKVLSSTDVLVLAEVYAAGEQPIVAADGRSLAHALRVAGKV 60
           VLAFQPHRYTRTRDLFEDF KVL++ D LVL EVYAAGE+PI AAD R+LA A+RV GK+
Sbjct: 363 VLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKL 422

Query: 61  EPIFVEDIAD 70
           EPI+ E++AD
Sbjct: 423 EPIYCENVAD 432


>NMA2061 [M] COG0773 UDP-N-acetylmuramate-alanine ligase NmA Neisseria
           meningitidis Z2491
          Length = 506

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 1   VLAFQPHRYTRTRDLFEDFVKVLSSTDVLVLAEVYAAGEQPIVAADGRSLAHALRVAGKV 60
           VLAFQPHRYTRTRDLFEDF KVL++ D LVL EVYAAGE+PI AAD R+LA A+RV GK+
Sbjct: 400 VLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYAAGEEPIAAADSRALARAIRVLGKL 459

Query: 61  EPIFVEDIAD 70
           EPI+ E++AD
Sbjct: 460 EPIYCENVAD 469


>PM0143 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Pmu Pasteurella
           multocida
          Length = 482

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 2   LAFQPHRYTRTRDLFEDFVKVLSSTDVLVLAEVYAAGEQPIVAADGRSLAHALRVAGKVE 61
           + FQPHRY+RTRDLF+DFV+VLS  DVL++ +VYAAGE PI  AD RSL  ++R  GKV+
Sbjct: 377 MIFQPHRYSRTRDLFDDFVQVLSQVDVLIMLDVYAAGETPIAGADSRSLCRSIRNLGKVD 436

Query: 62  PIFVED 67
           PIFV D
Sbjct: 437 PIFVSD 442


>VC2400 [M] COG0773 UDP-N-acetylmuramate-alanine ligase Vch Vibrio cholerae
          Length = 506

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 52/67 (77%)

Query: 1   VLAFQPHRYTRTRDLFEDFVKVLSSTDVLVLAEVYAAGEQPIVAADGRSLAHALRVAGKV 60
           V+ FQPHRYTRTRDL++DF  VL   DVL++ +VYAAGE+PI  ADGRSL   +R  GK+
Sbjct: 394 VMIFQPHRYTRTRDLYDDFANVLEQVDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKI 453

Query: 61  EPIFVED 67
           +PIFV D
Sbjct: 454 DPIFVPD 460