BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0016.p (923 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2834 [U] COG0653 Preprotein translocase subunit SecA (ATPase,... 1399 0.0 NMB1536 [U] COG0653 Preprotein translocase subunit SecA (ATPase,... 1181 0.0 NMA1735 [U] COG0653 Preprotein translocase subunit SecA (ATPase,... 1180 0.0 XF0806 [U] COG0653 Preprotein translocase subunit SecA (ATPase, ... 1102 0.0 VC2394 [U] COG0653 Preprotein translocase subunit SecA (ATPase, ... 1099 0.0 >RSc2834 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Rso Ralstonia solanacearum Length = 934 Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/938 (71%), Positives = 774/938 (82%), Gaps = 25/938 (2%) Query: 3 LLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDDIL 62 LL +IFGSRN+RL+KQY++ V QINALE E LSDAELQAKT F++R A G LD +L Sbjct: 5 LLKKIFGSRNERLIKQYRRKVVQINALEPTFEALSDAELQAKTQAFRERFAKGETLDALL 64 Query: 63 PEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSGK 122 PEAFAVCREASKRV+KMRHFDVQL+GGMVLH GKIAEMRTGEGKTL ATL YLNA++G Sbjct: 65 PEAFAVCREASKRVMKMRHFDVQLIGGMVLHDGKIAEMRTGEGKTLTATLAVYLNAIAGL 124 Query: 123 GVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEFGF 182 GVHVVTVNDYLAQRDAEWMGKLY WLGLS GVNL+ M HD KQ AYA+DITYGTNNEFGF Sbjct: 125 GVHVVTVNDYLAQRDAEWMGKLYNWLGLSVGVNLTTMAHDEKQAAYAADITYGTNNEFGF 184 Query: 183 DYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVPP 242 DYLRDNMV+D + RVQR LN+AIVDEVDSILIDEARTPLIISGQAE+HTDLY ++N +PP Sbjct: 185 DYLRDNMVYDDSQRVQRPLNYAIVDEVDSILIDEARTPLIISGQAEDHTDLYRRMNSIPP 244 Query: 243 LLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASLYD 302 LLT QIGEE DG G VE PGDY DEK HQV LTEAGHE+AEQIL GLL EG SLY Sbjct: 245 LLTRQIGEEKADGTG-VEKPGDYYVDEKSHQVYLTEAGHEKAEQILLQAGLLAEGESLYA 303 Query: 303 ASNISLVHHLYAALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEAK 362 NI+L+HHLYA+LRAH+L+H+DQ YVVQ EV+IVDEFTGRLM GRRWSDGLHQAVEAK Sbjct: 304 PQNITLMHHLYASLRAHSLFHRDQHYVVQGDEVIIVDEFTGRLMQGRRWSDGLHQAVEAK 363 Query: 363 EGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPSAR 422 EGV+IQ ENQTLA+ITFQNYFRMY KL+GMTGTADTEAYEFQEIY LETVVIP NR + R Sbjct: 364 EGVQIQQENQTLATITFQNYFRMYAKLAGMTGTADTEAYEFQEIYGLETVVIPTNRQAQR 423 Query: 423 KDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNVLN 482 KD QDQ+YKTS+E+Y A+++DI+DC+ERGQPVLVGTTSIENSELLS +LNQ++LPH VLN Sbjct: 424 KDLQDQIYKTSKERYDAVIRDIRDCFERGQPVLVGTTSIENSELLSHLLNQAQLPHQVLN 483 Query: 483 AKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKAAQ 542 AKQHAREAEI+AQAGRPKM+TIATNMAGRGTDIVLGGNVE Q + AD SLSD +KA + Sbjct: 484 AKQHAREAEIVAQAGRPKMVTIATNMAGRGTDIVLGGNVEKQAGFVMADESLSDEEKARR 543 Query: 543 AQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLDDA 602 +L+DEWQSLH+ V +AGGLHI+GTERHESRR+DNQLRGR+GRQGDPGSSRFYLSLDD Sbjct: 544 VTQLQDEWQSLHEQVKAAGGLHIVGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDQ 603 Query: 603 LLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDVAN 662 LLRIFAGDRVRAIMDRLKMPEGEPIEAGIV+RSIESAQRKVE RNFDIRKQLL+YDDVAN Sbjct: 604 LLRIFAGDRVRAIMDRLKMPEGEPIEAGIVTRSIESAQRKVEGRNFDIRKQLLQYDDVAN 663 Query: 663 DQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALSNE 722 DQR+ IY+ RNE+LEA + +++ +LRE VF E FR +VP ES+EEQWD+ LE L ++ Sbjct: 664 DQRREIYKLRNEILEAVDAGDLVKNLRESVFVELFRAYVPAESMEEQWDLAGLEKTLRDD 723 Query: 723 WQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSIDS 782 W + VPL +E ++ DEELL +V A Y KV VG E+F+GFERSVMLQS+D+ Sbjct: 724 WGVEVPLVKTVEQAQSIEDEELLTQVQEAVEAVYAGKVAQVGRESFAGFERSVMLQSLDT 783 Query: 783 HWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRIES 842 HWREHLAALDHLRQGIHLRGYAQK+PKQEYKRE+FELF ++LD I+NEV +I+ TVRI+S Sbjct: 784 HWREHLAALDHLRQGIHLRGYAQKDPKQEYKRESFELFGRLLDNIRNEVTRIIFTVRIQS 843 Query: 843 REAIEEAEENLAQ--SHVENVHYQHADFDANAAPEELLAPTANAASDDQSQQPMVNG--- 897 + +EEA E + + S + NV Y+H +F LA A ++ + P V Sbjct: 844 QAELEEASEQIEEDLSQLTNVQYKHDEFSE-------LAEVAAGDAEIHGETPPVPAHRS 896 Query: 898 ------------LPKVGRNDPCPCGSGKKYKQCHGKLA 923 +PKVGRNDPCPCGSGKKYKQCHGKLA Sbjct: 897 AAASAAAALAGQVPKVGRNDPCPCGSGKKYKQCHGKLA 934 >NMB1536 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Nme Neisseria meningitidis MC58 Length = 916 Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/924 (62%), Positives = 720/924 (77%), Gaps = 13/924 (1%) Query: 2 SLLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDDI 61 ++ +IFGSRN RLLKQY+K V +INALE ++ LSDA+LQAKT EFKQR+ADG LD I Sbjct: 4 NIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQAKTAEFKQRLADGQTLDGI 63 Query: 62 LPEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSG 121 LPEAFAVCREAS+R L MRHFDVQL+GGMVLH GKIAEMRTGEGKTL+ATL YLNAL+G Sbjct: 64 LPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEMRTGEGKTLVATLAVYLNALAG 123 Query: 122 KGVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEFG 181 KGVHVVTVNDYLA RDA M LY +LGL+ GV +S M+ +Q AYA+DITYGTNNEFG Sbjct: 124 KGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISDMQPFDRQNAYAADITYGTNNEFG 183 Query: 182 FDYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVP 241 FDYLRDNMV D D+VQR LNFA+VDEVDSILIDEARTPLIISGQA+++ LY +N VP Sbjct: 184 FDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDEARTPLIISGQADDNIQLYQIMNTVP 243 Query: 242 PLLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASLY 301 P L Q ET +G+G DY DEK HQV+L+EAGHE AEQILT MGLL E SLY Sbjct: 244 PHLVRQ---ETEEGEG------DYWVDEKAHQVILSEAGHEHAEQILTQMGLLAENDSLY 294 Query: 302 DASNISLVHHLYAALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEA 361 A+NI+L+HHL AALRAH+L+HKDQ YV+Q+GE+VIVDEFTGRLM+GRRWS+GLHQAVEA Sbjct: 295 SAANIALMHHLMAALRAHSLFHKDQHYVIQDGEIVIVDEFTGRLMSGRRWSEGLHQAVEA 354 Query: 362 KEGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPSA 421 KEGV+I+ ENQTLASITFQNYFR+Y KLSGMTGTADTEA+EFQ IYNLETV+IP NRP Sbjct: 355 KEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTEAFEFQSIYNLETVIIPTNRPVQ 414 Query: 422 RKDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNVL 481 RKD DQ++++++EK+ A+VKDI++C++RGQPVLVGTTSIENSEL+S +L Q+ LPHNVL Sbjct: 415 RKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVGTTSIENSELVSKLLTQAGLPHNVL 474 Query: 482 NAKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKAA 541 NAK+H REA I+AQAG+ IT+ATNMAGRGTDIVLGGN+++Q I AD +LSD +K A Sbjct: 475 NAKEHEREALIVAQAGKVGAITVATNMAGRGTDIVLGGNLKHQTDAIRADETLSDEEKQA 534 Query: 542 QAQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLDD 601 Q L D WQ+ HD V+ AGGLHIIGTERHESRR+DNQLRGRSGRQGDPGSSRFYLS +D Sbjct: 535 QIAALEDGWQAEHDKVMEAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSFED 594 Query: 602 ALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDVA 661 LLR+FA DR AI++RL G IE +++R IE AQRKVE RNFD+RKQ+LEYDDVA Sbjct: 595 PLLRLFALDRAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVEGRNFDMRKQVLEYDDVA 654 Query: 662 NDQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALSN 721 N+QRKVIY QRNE+L + ++ +++ +R V ++ T++P +S+EEQWDIP LE L+ Sbjct: 655 NEQRKVIYSQRNEILTSKDISDLMQEIRSDVVSDLVDTYMPPDSMEEQWDIPTLENRLAA 714 Query: 722 EWQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSID 781 E++L + + L+A+ + +++ ER++ Y AK ++VG +A + FER+VMLQ ID Sbjct: 715 EFRLHEDIQSWLKADNAIDGQDIKERLIERIENEYAAKTELVGKQAMADFERNVMLQVID 774 Query: 782 SHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRIE 841 + WREHLAA+D+LRQGIHLR YAQKNPKQEYKREAF +F + + IK + ++ +V+IE Sbjct: 775 NQWREHLAAMDYLRQGIHLRSYAQKNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIE 834 Query: 842 SREAIEEAEENLAQSHVENVHYQHADFDA--NAAPEELLAPTANAASDDQSQQPMVNGLP 899 E+ + +++++H + D + + +L+ N D S + + Sbjct: 835 QNPVAVVEEQPIG--NIQSIHSESPDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQ 892 Query: 900 KVGRNDPCPCGSGKKYKQCHGKLA 923 V RNDPCPCGSG KYKQCHGKLA Sbjct: 893 IVHRNDPCPCGSGLKYKQCHGKLA 916 >NMA1735 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) NmA Neisseria meningitidis Z2491 Length = 916 Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/924 (62%), Positives = 720/924 (77%), Gaps = 13/924 (1%) Query: 2 SLLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDDI 61 ++ +IFGSRN RLLKQY+K V +INALE ++ LSDA+LQAKT EFKQR+ADG LD I Sbjct: 4 NIAKKIFGSRNDRLLKQYRKSVARINALEEQMQALSDADLQAKTAEFKQRLADGQTLDGI 63 Query: 62 LPEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSG 121 LPEAFAVCREAS+R L MRHFDVQL+GGMVLH GKIAEMRTGEGKTL+ATL YLNAL+G Sbjct: 64 LPEAFAVCREASRRTLGMRHFDVQLIGGMVLHDGKIAEMRTGEGKTLVATLAVYLNALAG 123 Query: 122 KGVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEFG 181 KGVHVVTVNDYLA RDA M LY +LGL+ GV +S M+ +Q AYA+DITYGTNNEFG Sbjct: 124 KGVHVVTVNDYLASRDAGIMEPLYNFLGLTVGVIISDMQPFDRQNAYAADITYGTNNEFG 183 Query: 182 FDYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVP 241 FDYLRDNMV D D+VQR LNFA+VDEVDSILIDEARTPLIISGQA+++ LY +N VP Sbjct: 184 FDYLRDNMVTDQYDKVQRELNFAVVDEVDSILIDEARTPLIISGQADDNIQLYQIMNTVP 243 Query: 242 PLLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASLY 301 P L Q ET +G+G DY DEK HQV+L+EAGHE AEQILT MGLL E SLY Sbjct: 244 PHLVRQ---ETEEGEG------DYWVDEKAHQVILSEAGHEHAEQILTQMGLLAENDSLY 294 Query: 302 DASNISLVHHLYAALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVEA 361 A+NI+L+HHL AALRAHTL+HKDQ YV+Q+GE+VIVDEFTGRLM+GRRWS+GLHQAVEA Sbjct: 295 SAANIALMHHLMAALRAHTLFHKDQHYVIQDGEIVIVDEFTGRLMSGRRWSEGLHQAVEA 354 Query: 362 KEGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPSA 421 KEGV+I+ ENQTLASITFQNYFR+Y KLSGMTGTADTEA+EFQ IYNLETV+IP NRP Sbjct: 355 KEGVEIKRENQTLASITFQNYFRLYTKLSGMTGTADTEAFEFQSIYNLETVIIPTNRPVQ 414 Query: 422 RKDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNVL 481 RKD DQ++++++EK+ A+VKDI++C++RGQPVLVGTTSIENSEL+S +L ++ LPHNVL Sbjct: 415 RKDFNDQIFRSAEEKFEAVVKDIEECHKRGQPVLVGTTSIENSELVSHLLQKAGLPHNVL 474 Query: 482 NAKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKAA 541 NAK+H REA I+AQAG+ IT+ATNMAGRGTDIVLGGN+++Q I AD +LSD +K A Sbjct: 475 NAKEHEREALIVAQAGKVGAITVATNMAGRGTDIVLGGNLKHQTDAIRADEALSDEEKQA 534 Query: 542 QAQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLDD 601 Q L D WQ+ HD V+ AGGLHIIGTERHESRR+DNQLRGRSGRQGDPGSSRFYLS +D Sbjct: 535 QISALEDGWQAEHDKVMEAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSFED 594 Query: 602 ALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDVA 661 LLR+FA DR AI++RL G IE +++R IE AQRKVE RNFD+RKQ+LEYDDVA Sbjct: 595 PLLRLFALDRAAAILNRLAPERGVAIEHNLLTRQIEGAQRKVEGRNFDMRKQVLEYDDVA 654 Query: 662 NDQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALSN 721 N+QRKVIY QRNE+L + ++ +++ +R V ++ T++P +S+EEQWDIP LE L+ Sbjct: 655 NEQRKVIYSQRNEILTSKDISDLMKEIRSDVVSDLVDTYMPPDSMEEQWDIPTLENRLAA 714 Query: 722 EWQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSID 781 E++L + + L+A+ + +++ ER++ Y AK ++VG +A + FER+VMLQ ID Sbjct: 715 EFRLHEDIQSWLKADNAIDGQDIKERLIERIENEYAAKTELVGKQAMADFERNVMLQVID 774 Query: 782 SHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRIE 841 + WREHLAA+D+LRQGIHLR YAQKNPKQEYKREAF +F + + IK + ++ +V+IE Sbjct: 775 NQWREHLAAMDYLRQGIHLRSYAQKNPKQEYKREAFTMFQDLWNGIKFHIASLLTSVQIE 834 Query: 842 SREAIEEAEENLAQSHVENVHYQHADFDA--NAAPEELLAPTANAASDDQSQQPMVNGLP 899 E+ + +++++H + D + + +L+ N D S + + Sbjct: 835 QNPVAVVEEQPIG--NIQSIHSESPDMEELLGQSQTDLVTEAFNPDGTDFSPEALEARGQ 892 Query: 900 KVGRNDPCPCGSGKKYKQCHGKLA 923 V RNDPCPCGSG KYKQCHGKLA Sbjct: 893 IVHRNDPCPCGSGLKYKQCHGKLA 916 >XF0806 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Xfa Xylella fastidiosa 9a5c Length = 914 Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/923 (60%), Positives = 668/923 (72%), Gaps = 19/923 (2%) Query: 2 SLLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDDI 61 SLLT++FGSRN+R L+Q IV +INALE +++KLSD LQAKT EFKQ + DG LD + Sbjct: 4 SLLTRLFGSRNERQLRQLNSIVAKINALETELQKLSDTALQAKTTEFKQSIQDGKSLDKL 63 Query: 62 LPEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSG 121 LPEAFAVCREAS+RVL MRH+DVQL+GGMVLH GKIAEMRTGEGKTL+ATLP YLNAL+G Sbjct: 64 LPEAFAVCREASRRVLGMRHYDVQLIGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALAG 123 Query: 122 KGVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEFG 181 GVHVVTVNDYLA+RDA MG+LY WLGLS GV M H K AY +DITYGTNNEFG Sbjct: 124 NGVHVVTVNDYLARRDAAHMGRLYNWLGLSVGVVYPGMPHSDKHAAYGADITYGTNNEFG 183 Query: 182 FDYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVP 241 FDYLRDNM DR QRGL++AIVDEVDSILIDEARTPLIISG A+ DLY ++N + Sbjct: 184 FDYLRDNMALSKADRYQRGLHYAIVDEVDSILIDEARTPLIISGPADESPDLYIRVNRII 243 Query: 242 PLLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLL-PEGASL 300 P LT Q EE GDY DEKG QV L+E G ERAE++L G+L E SL Sbjct: 244 PHLTRQENEEA---------EGDYWVDEKGKQVHLSEVGMERAEELLHQAGILGEEDDSL 294 Query: 301 YDASNISLVHHLYAALRAHTLYHKDQQYVVQNGEVVIVDEFTGRLMTGRRWSDGLHQAVE 360 Y A N+S+VHHL AALRAH LY +D Y+V++GEVVIVDEFTGR + GRRWSDGLHQA+E Sbjct: 295 YAAQNLSVVHHLNAALRAHALYQRDVDYIVRDGEVVIVDEFTGRTLAGRRWSDGLHQAIE 354 Query: 361 AKEGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPS 420 AKEGV +Q ENQTLASITFQN FR+Y KLSGMTGTADTEAYEFQ IY LE +VIP NRP+ Sbjct: 355 AKEGVPVQRENQTLASITFQNLFRIYKKLSGMTGTADTEAYEFQSIYGLEVMVIPTNRPT 414 Query: 421 ARKDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNV 480 RKD DQV+ K+ A+++DI+DC +RGQPVLVGTTSIE SE+LS L ++K+ H V Sbjct: 415 VRKDYPDQVFLNRSSKFNAVLEDIKDCAQRGQPVLVGTTSIEISEMLSEHLRKAKVKHEV 474 Query: 481 LNAKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKA 540 LNAKQH REA I+A AG P +TIATNMAGRGTDIVLGG+++ + +D DA+ D + Sbjct: 475 LNAKQHEREATIVANAGLPGAVTIATNMAGRGTDIVLGGSLDTVLAELDPDATEEDRFRV 534 Query: 541 AQAQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLD 600 A W H+ V +AGGLHIIGTERHESRR+DNQLRGR+GRQGDPGSSRFYLSL+ Sbjct: 535 KTA------WNRRHEAVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 588 Query: 601 DALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDV 660 D+L+RIFA + V+ +M + M EG+ IE V+R IE AQRKVEA NFDIRK LL+YDDV Sbjct: 589 DSLMRIFASEWVQKVMRLMGMKEGDVIEDRRVTRQIERAQRKVEAHNFDIRKNLLDYDDV 648 Query: 661 ANDQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALS 720 N+QRKV+Y QR+ELL+A ++E I S+R V VPE S++EQWD+P L+A L Sbjct: 649 NNEQRKVVYAQRDELLDAESIKENIDSIRHEVIDALVTRFVPEHSIDEQWDLPGLQATLQ 708 Query: 721 NEWQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSI 780 +EW L +PL +L+ + E + V A + +GAE E+ VML + Sbjct: 709 SEWGLHLPLIEMLKGREEVDAERIAFLVQDAVDKHCAEREASIGAETMRALEKHVMLTVL 768 Query: 781 DSHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRI 840 D W+EHLA +D+LRQGIHLRGYAQK PKQEYKREAFELF++ML+ +K EVI + VRI Sbjct: 769 DQGWKEHLATMDYLRQGIHLRGYAQKQPKQEYKREAFELFSEMLEHVKREVIASLARVRI 828 Query: 841 ESRE---AIEEAEENLAQSHVENVHYQHADFDANAAPEELLAPTANAASDDQSQQPMVNG 897 S E A+EE E + + +QH + +E ++ A + ++ Sbjct: 829 RSEEEMAALEEQERRQVDTLLRQSQFQHQEAGGYGTGDEAVSLQRQLAGQGAAIAQVIRD 888 Query: 898 LPKVGRNDPCPCGSGKKYKQCHG 920 PKVGRNDPCPCGSGKKYK CHG Sbjct: 889 TPKVGRNDPCPCGSGKKYKHCHG 911 >VC2394 [U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) Vch Vibrio cholerae Length = 903 Score = 1099 bits (2842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/921 (59%), Positives = 683/921 (74%), Gaps = 24/921 (2%) Query: 3 LLTQIFGSRNQRLLKQYQKIVRQINALEADIEKLSDAELQAKTPEFKQRVADGTKLDDIL 62 LLT++ GSRN R L++ +KIV++IN E E LSD EL+AKT EF+QR+ G LD +L Sbjct: 5 LLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENLDQLL 64 Query: 63 PEAFAVCREASKRVLKMRHFDVQLVGGMVLHFGKIAEMRTGEGKTLMATLPAYLNALSGK 122 PEAFA REASKRV MRHFDVQL+GGMVLH G+IAEMRTGEGKTL ATL AYLNAL GK Sbjct: 65 PEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNALPGK 124 Query: 123 GVHVVTVNDYLAQRDAEWMGKLYGWLGLSTGVNLSQMEHDLKQGAYASDITYGTNNEFGF 182 GVH+VTVNDYLA+RDAE L+ +LG++ GVN+ M K+ AY +DI YGTNNEFGF Sbjct: 125 GVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNNEFGF 184 Query: 183 DYLRDNMVFDATDRVQRGLNFAIVDEVDSILIDEARTPLIISGQAENHTDLYHKINGVPP 242 DYLRDNM F DRVQR FA+VDEVDSILIDEARTPLIISG AE+ +DLY +IN + P Sbjct: 185 DYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRINKLIP 244 Query: 243 LLTLQIGEETPDGKGKVEVPGDYTKDEKGHQVLLTEAGHERAEQILTSMGLLPEGASLYD 302 LL Q E++ + +G G +T DEK QV LTE G E E++L G++ EG +LY Sbjct: 245 LLQKQDKEDSEEYRGD----GHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS 300 Query: 303 ASNISLVHHLYAALRAHTLYHKDQQYVVQ-NGEVVIVDEFTGRLMTGRRWSDGLHQAVEA 361 +NISL+HH+ AALRAH L+ K+ Y+V +GEVVIVDE TGR M GRRWSDGLHQAVEA Sbjct: 301 PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA 360 Query: 362 KEGVKIQNENQTLASITFQNYFRMYGKLSGMTGTADTEAYEFQEIYNLETVVIPPNRPSA 421 KEGVKIQNENQTLASITFQNYFR+Y KLSGMTGTADTEA+EFQ+IY LETVVIP N+P Sbjct: 361 KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV 420 Query: 422 RKDRQDQVYKTSQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILNQSKLPHNVL 481 R D D VY++ EK+ A+++DI+ E+GQPVLVGT SIE SELLS L ++ + HNVL Sbjct: 421 RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL 480 Query: 482 NAKQHAREAEIIAQAGRPKMITIATNMAGRGTDIVLGGNVENQIKIIDADASLSDADKAA 541 NAK H +EAEI+A+AG+P +TIATNMAGRGTDIVLGG+ + +++ +D Sbjct: 481 NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQ-------E 533 Query: 542 QAQKLRDEWQSLHDHVVSAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRFYLSLDD 601 Q ++ EW+ +HD V+ AGGLHIIGTERHESRR+DNQLRGRSGRQGD GSSRFYLS++D Sbjct: 534 QIDAIKAEWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 593 Query: 602 ALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEYDDVA 661 LLRIF DR+ A++ + M EGE IE+ ++SRSIE AQRKVE RNFDIRKQLLEYDDVA Sbjct: 594 TLLRIFTSDRMAALI-QSGMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVA 652 Query: 662 NDQRKVIYQQRNELLEAAEMEEMITSLREGVFTEAFRTHVPEESVEEQWDIPALEAALSN 721 NDQRKV+Y+ R+EL+ A ++ +MI RE V ++P +S+E+ WDI LE L N Sbjct: 653 NDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKN 712 Query: 722 EWQLAVPLTAILEAEPNLTDEELLERVLSAAATTYKAKVDVVGAEAFSGFERSVMLQSID 781 ++ L +P+ + L+A+ L +E L ER++ A YKAK V FE+SVMLQ++D Sbjct: 713 DFDLPLPIQSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLD 772 Query: 782 SHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKIVMTVRIE 841 + W+EHLAA+DHLRQGIHLRGYAQKNPKQEYKRE+FELF +L+ +K++VI ++ VR++ Sbjct: 773 TLWKEHLAAMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQ 832 Query: 842 SREAIEEAEENLAQSHVENVHYQHADFDANAAPEELLAPTANAASDDQSQQPMVNGLPKV 901 +E +E E AQ + A + A + +A+ A D+S QPMV KV Sbjct: 833 QQEEVERME---AQ--------RRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERKV 881 Query: 902 GRNDPCPCGSGKKYKQCHGKL 922 GRN+PCPCGSGKKYKQCHG++ Sbjct: 882 GRNEPCPCGSGKKYKQCHGQI 902