BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0454.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing prot... 189 7e-48 BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing pro... 175 7e-44 mll2686 [K] COG2207 AraC-type DNA-binding domain-containing prot... 169 8e-42 PA0791 [K] COG2207 AraC-type DNA-binding domain-containing prote... 167 2e-41 PA3927 [K] COG2207 AraC-type DNA-binding domain-containing prote... 166 6e-41 >RSc3062 [K] COG2207 AraC-type DNA-binding domain-containing proteins Rso Ralstonia solanacearum Length = 268 Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 106/246 (43%), Positives = 149/246 (60%), Gaps = 7/246 (2%) Query: 4 PVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHEL 63 PV + Q R H+H AQ+ Y+ +GV+R+ +W++PPSRA+WI PG++HE+ Sbjct: 22 PVRLYTRQMQANSRFPRHTHAWAQVAYSHTGVLRVQAGDTAWVVPPSRAIWIPPGIEHEV 81 Query: 64 HAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGM-LADPLEYAPDSRAALIAP 122 V A LR++Y +P V+ A C ++EVS LL ELI M + PL A R +A Sbjct: 82 WVVEAAFLRTLYVDPSVVTGTLAQCRVMEVSPLLRELIAAMDVRRPLSAA---REQAVAT 138 Query: 123 LLLRAL-QDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLARH 181 L+L L + AP LP+PTD RLR +CE++M DPG T + + G STRTLAR Sbjct: 139 LILDELHRSAPLPLD--LPMPTDKRLRALCERVMADPGTPLTFDALAREVGASTRTLARR 196 Query: 182 FRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQR 241 FRDE G++F QWRQQ ++ A+ + PL+R+A+ LGY SQSAF MFR++ G +P Sbjct: 197 FRDELGVNFSQWRQQAVLASAIPLMSQGLPLSRIAQALGYNSQSAFSAMFRRAFGQSPSA 256 Query: 242 YLTSLG 247 +L G Sbjct: 257 FLHRPG 262 >BMEI1291 [K] COG2207 AraC-type DNA-binding domain-containing proteins Bme Brucella melitensis Length = 300 Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 1/242 (0%) Query: 1 MPRPVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVD 60 M P + Y DGY HSH +AQL+ A+ GVV + T AG W++P AMWI GV+ Sbjct: 42 MTGPAIALPTRYPDGYFVPRHSHSRAQLLCASQGVVLVTTDAGRWMIPSDHAMWIPAGVE 101 Query: 61 HELHAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALI 120 H + +G V +RS+Y DA+S + ++ ++ L+ LI+ + AP+SR L+ Sbjct: 102 HSVAILGDVFMRSIYISVDAISGVPNYLHVVGLTDLMRCLIIDATSHDSIPAPESRDGLV 161 Query: 121 APLLLRALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLAR 180 L+LR L P GL P P+D RL+++C + P + T++ W ++ +S R+ R Sbjct: 162 IELILRDLHTLPEYPLGL-PFPSDPRLQKLCRDFVKKPSSRATIDEWADRMAMSRRSFTR 220 Query: 181 HFRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQ 240 HF+ ETG+S WRQQ + AV RL EP+ VA LGY S SAF TMFR+ +G P+ Sbjct: 221 HFQRETGVSLSVWRQQACLFAAVPRLSEGEPVTSVALDLGYDSVSAFTTMFRRMLGVPPK 280 Query: 241 RY 242 Y Sbjct: 281 FY 282 >mll2686 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 292 Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%) Query: 4 PVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHEL 63 P V +Y DGY H H ++QL++A GVV + T G W++PP AMWI G++H + Sbjct: 32 PAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAMWIPAGIEHSV 91 Query: 64 HAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALIAPL 123 +G V++RSVY P A+ L ++ V+ L+H LIV P + R LI L Sbjct: 92 EMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKL 151 Query: 124 LLRALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLARHFR 183 LL + P GL P P+DARL +C + + P + T++ W + G+S R+ R F+ Sbjct: 152 LLHEIPTLPERPLGL-PFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQ 210 Query: 184 DETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQRYL 243 +TGLS WRQQ + A+ RL EP+ RVA LGY S AFITMF++ +G++P+ Y+ Sbjct: 211 RQTGLSLSTWRQQACLFAALPRLADGEPITRVALDLGYDSVPAFITMFKRMLGSSPRGYM 270 >PA0791 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 136/243 (55%), Gaps = 6/243 (2%) Query: 2 PRPVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDH 61 PR VV DY DGY H H +AQL+Y SGV+++ T W++PP RA+WI PGV+H Sbjct: 13 PRAVVAMGTDYPDGYLLPRHRHRRAQLLYGASGVMQVRTGDAGWVVPPQRAVWIPPGVEH 72 Query: 62 ELHAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALIA 121 E+ +G V+ RS+Y EP + + A C ++ VS LL +L++ + PLEY + R +A Sbjct: 73 EVRMLG-VSTRSLYIEPGSAMAMPAHCQVLAVSPLLRQLLLAAVDMPLEYDTEGRDGALA 131 Query: 122 PLLLRALQDAPA--AHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLA 179 LLL L A H +PLP + R +CE + +P + E W S R+ Sbjct: 132 TLLLHELAAAETLPLH---VPLPPEPRWLALCEAFLVEPDIRASAERWAGLLHTSLRSFN 188 Query: 180 RHFRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTP 239 R FR TGLSFG W+Q+ V +A+ RL E + +A GY S +AF TMFR+ +G P Sbjct: 189 RTFRRYTGLSFGAWKQRACVVQALARLAGGETVTAIALDCGYQSPAAFSTMFRRVLGQPP 248 Query: 240 QRY 242 + Sbjct: 249 SAF 251 >PA3927 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 262 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 142/240 (59%), Gaps = 5/240 (2%) Query: 9 AFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHELHAVGA 68 + D+ DG+ H H QAQ +YA G++R+ T G+W++PP+RA+WI P V+HE+ G Sbjct: 15 SLDFPDGHHLGRHFHPQAQFLYAARGLMRLATHHGAWVIPPTRAVWIPPRVEHEIFMSGE 74 Query: 69 VALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAP--DSRAALIAPLLLR 126 V +R+++ E +DC ++ V+ LL E+I + A LE P D + L+L Sbjct: 75 VHMRTLFIEQPETPTPLSDCCVLAVTPLLREMI--LRAIHLESQPRLDDFCQRLQGLILS 132 Query: 127 ALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLARHFRDET 186 + + LP+P D RL+ IC+ L+ P TL+ WG + G S+RTLAR F E Sbjct: 133 EIANLERM-PLYLPMPRDRRLQAICQALLKQPELGLTLDDWGLRVGASSRTLARLFAQEL 191 Query: 187 GLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQRYLTSL 246 +SF +WRQQ+R++EA+ RL+ + + VA LGY S AF +MFR+ +G TP+ YL L Sbjct: 192 QMSFHEWRQQLRLTEALPRLLAGDSVQVVARDLGYGSTRAFSSMFRRLLGETPRDYLGRL 251