BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0447.p         (170 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4287 [GER] COG0697 Permeases of the drug/metabolite transporte...   118   5e-27
RSp1638 [GER] COG0697 Permeases of the drug/metabolite transport...   111   6e-25
AGpA485 [GER] COG0697 Permeases of the drug/metabolite transport...   107   1e-23
YPO2761 [GER] COG0697 Permeases of the drug/metabolite transport...    97   1e-20
mlr3874 [GER] COG0697 Permeases of the drug/metabolite transport...    67   2e-11

>PA4287 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Pae Pseudomonas aeruginosa
          Length = 296

 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 90/137 (65%), Gaps = 2/137 (1%)

Query: 31  YLLPLLAVCIWSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIAAD 90
           YL PLLAV IW+GNT+V K A   I+PA I F+RW+L  L +TPF+     R R  I A 
Sbjct: 3   YLFPLLAVFIWAGNTVVNKLAVGIIQPAEIGFFRWLLVGLALTPFMLGPVLRNRRYILA- 61

Query: 91  WNWARLLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSMLSGERLSTAR 150
            N  + ++LG LGMA+YQ LAY AA  TSA NMG+ ++LMPL+S  L+S +   RL+   
Sbjct: 62  -NLGKFVVLGLLGMAVYQSLAYYAAALTSATNMGIILSLMPLMSLGLASSILAHRLNAGA 120

Query: 151 IAGGLVSLLGLIVLSTH 167
           + G LVSL G++++ + 
Sbjct: 121 LLGALVSLAGVVLVISQ 137


>RSp1638 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 297

 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 6/136 (4%)

Query: 30  FYLLPLLAVCIWSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIAA 89
           FY  PLLAV +W+ NTIV+KAA+  ++PAAI+ YRWV+A  V+TPF  R  WRQR  +  
Sbjct: 4   FY--PLLAVLVWAANTIVSKAAAGVLDPAAISLYRWVIAAAVLTPFWARPLWRQRRDVLP 61

Query: 90  DWNW-ARLLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSMLSGERLST 148
              W  RL +L  LG+ MYQ L+Y AA+STSA N+GV  AL+P++   ++ ++  + +  
Sbjct: 62  ---WLPRLSVLALLGLVMYQCLSYYAAYSTSATNIGVICALIPMLGLIINGVVFRQPVGA 118

Query: 149 ARIAGGLVSLLGLIVL 164
             +AG  VSLLG++ L
Sbjct: 119 PAVAGIAVSLLGVLYL 134


>AGpA485 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 309

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 92/136 (67%), Gaps = 2/136 (1%)

Query: 29  KFYLLPLLAVCIWSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIA 88
           K+ L  LLAV IW GNTIV+K A+ AI P  IAF RW +A +++TP + R AWR R  IA
Sbjct: 10  KYLLFSLLAVLIWVGNTIVSKLAAGAIAPGTIAFERWFIAFVILTPLVYRDAWRHRRTIA 69

Query: 89  ADWNWARLLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSMLSGERLST 148
           A  +  +L+LLG LGMA  QGL Y AA  T+A NM + ++L+PL++  LS++   ER S+
Sbjct: 70  A--HLPKLILLGLLGMAACQGLGYYAAGLTTATNMAIMLSLVPLLTLILSAVFLAERPSS 127

Query: 149 ARIAGGLVSLLGLIVL 164
             + GG++SL G+ ++
Sbjct: 128 LAVIGGIISLSGIFIV 143


>YPO2761 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Ype Yersinia pestis
          Length = 305

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 2/110 (1%)

Query: 32  LLPLLAVCIWSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIAADW 91
           L PL AV IWS N +V+K ++TAI+PAAI+FYRW+LA+L ++PFL     R   AI   W
Sbjct: 4   LFPLFAVIIWSVNAVVSKISATAIDPAAISFYRWLLALLTLSPFLLLGVVRNWQAIRVYW 63

Query: 92  NWARLLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSML 141
            W +L+LLG LGM +YQ LAY AAHS SA+ MG+  +L+PL++  +S +L
Sbjct: 64  -W-KLMLLGMLGMVLYQSLAYYAAHSVSALFMGILSSLIPLLTVLISIVL 111


>mlr3874 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Mlo Mesorhizobium loti
          Length = 303

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 12/132 (9%)

Query: 41  WSGNTIVTKAASTAIEPAAIAFYRWVLAVLVMTPFLGRAAWRQRAAIAADW-----NWAR 95
           W GN++  K A   + P  + F RWVLAV ++ P      WR   +I  DW     +W  
Sbjct: 16  WGGNSVAGKLAVDHVSPMMLVFLRWVLAVAILLPI----GWR---SIQQDWPVVRRHWLI 68

Query: 96  LLLLGALGMAMYQGLAYEAAHSTSAVNMGVTVALMPLISACLSSMLSGERLSTARIAGGL 155
           L  LGA G  ++  + Y A + T+A+N+ +  A MP++    + +    R++ A+IAG +
Sbjct: 69  LAALGASGFTLFNVIFYTALNYTTAINVSIEQAAMPILIMTANFVFFRLRVNWAQIAGVV 128

Query: 156 VSLLGLIVLSTH 167
           +++ G+I+ + H
Sbjct: 129 LTIAGVILTACH 140