BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0445.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1141 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 185 9e-47 SMc02893 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 171 1e-42 PA2834 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 148 8e-36 RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 94 2e-19 RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 92 8e-19 >mll1141 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 296 Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 129/213 (60%), Gaps = 5/213 (2%) Query: 17 VDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRDGLIDLE 76 +DLST++R LRTN+GF + L R+ EAP + LRF P++DK V LRD IDLE Sbjct: 88 LDLSTLDRVFTLRTNEGFVEEFGPCLVARIGAEAPEVRLRFAPKSDKDVMSLRDAAIDLE 147 Query: 77 VGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISASRHGHNSG 136 +G E T E+ Q LFR F+G VRA HPL++ ++ + A HIS SR G G Sbjct: 148 IGVAGE---TGPEVRIQALFRDRFIGAVRAGHPLSKGTVTPERYAAGRHISVSRRGREKG 204 Query: 137 PIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFARWAMQHLRLHIFRLPLA 196 PID+AL GL+R V + GF +A+ MA +S+++A+ PE A ++ FRLP+ Sbjct: 205 PIDEALGGLGLRRMVVCMVSGFSAALAMARASELIASVPERHTAGARAG--MYSFRLPVT 262 Query: 197 TPEVEVSQSWHPRRHADPVHKWLRGLVRELCSD 229 T EV +S WHPR ADP +WLR VRE+C+ Sbjct: 263 TVEVTISMLWHPRLDADPAQRWLRECVREVCAS 295 >SMc02893 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 308 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 135/230 (58%), Gaps = 7/230 (3%) Query: 1 VDALAQEMRKVFM-TDQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLP 59 V L +E V +++DL + RT LRT+DGF + L R+ EAPG+ L F+ Sbjct: 71 VGRLVEEAEAVLRPQEKLDLKRLVRTFTLRTSDGFVENFGPCLLARLGAEAPGVRLAFVQ 130 Query: 60 RADKHVAGLRDGLIDLEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLAN 119 ++DK LRDG +DLE G + G+ T EL TQ LFR F+GVVR H L+ +++ A Sbjct: 131 KSDKGSGPLRDGSVDLETGVV--GEATGPELRTQALFRDRFIGVVRNGHALSGGEVTPAR 188 Query: 120 FTAWPHISASRHGHN--SGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPEL 177 + A HI SR G + IDD L + GL+R++ + GF SA+ +A SSD++A+ PE Sbjct: 189 YAAGRHILVSRRGPEKVAVGIDDTLGSIGLEREIVTIVGGFSSALALARSSDLIASVPER 248 Query: 178 FARWAMQHLRLHIFRLPLATPEVEVSQSWHPRRHADPVHKWLRGLVRELC 227 Q +H F LP + P++ VS WHPR ADP H+WLRG +RE+C Sbjct: 249 HTSALRQG--MHSFPLPFSLPQITVSLLWHPRLDADPAHRWLRGCIREVC 296 >PA2834 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 319 Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 1 VDALAQEMRKVFMT-DQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLP 59 V L + R +F T + + L +ER LR+N+ G + RL + A+EAP +LRF+ Sbjct: 80 VRQLVDQARDLFNTRETIQLDKLERCFTLRSNNTLVGGLSIRLLEIFAEEAPRCTLRFVQ 139 Query: 60 RADKHVAGLRDGLIDLEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLAN 119 +D LR IDL +GA E+ TQ L T FVG+ R HP+ +I+ Sbjct: 140 ESDIDDEALRQNRIDLYIGA---SSWMEPEVKTQQLLTTRFVGLARQGHPIFDGEITPQR 196 Query: 120 FTAWPHISASRHGHNSGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFA 179 F A+PHI+ SR G N GP+D AL GL+R V+L++P F SA+ SD++ E + Sbjct: 197 FVAFPHIAVSRRGLNHGPLDQALGELGLKRDVKLISPTFHSAIFALPGSDLLLPIAE-HS 255 Query: 180 RWAMQHLRLHI--FRLPLATPEVEVSQSWHPRRHADPVHKWLRGLVRELCSD 229 W L L + F +P+ V V Q+WHPR DP H+W R ++ +C + Sbjct: 256 LWRANRLGLGLRQFDIPVPLKTVMVVQAWHPRFDNDPAHRWFRQTIKRICEE 307 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 10/216 (4%) Query: 14 TDQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRD--- 70 T + + +T R + D + L +R+A++APG+++ H LRD Sbjct: 87 TSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLARDAPGVTVS---TVRNHADTLRDEME 143 Query: 71 -GLIDLEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISAS 129 G +DL +G L D + LFR +V + R HPLA++ +++ F H+S Sbjct: 144 AGRVDLAIGFL---PDLKSGFFQRRLFRQRYVCLFRKGHPLAKRGMTMEGFLEAEHVSIV 200 Query: 130 RHGHNSGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFARWAMQHLRLH 189 G G +D + GL R+V L P F + + S+D++A P+ +A ++ L Sbjct: 201 AEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTDLIAVVPQAYATRTLKPFGLD 260 Query: 190 IFRLPLATPEVEVSQSWHPRRHADPVHKWLRGLVRE 225 P+ P++ ++ WH R H +P ++WLR L+ E Sbjct: 261 TAACPVKIPDITINVLWHARNHREPGNQWLRQLLFE 296 >RSc2243 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 326 Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 108/236 (45%), Gaps = 9/236 (3%) Query: 2 DALAQEMRKVFMTDQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLR--FLP 59 D LA+ + + T D +T + +D + R+ + +A++AP S++ LP Sbjct: 77 DVLARIQQGIVETGAFDPATTTHLFSIALSDVGEMVFLPRIVEAMARQAPHASVQSVTLP 136 Query: 60 RADKHVAGLRDGLIDLEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLAR---KKIS 116 A A L G +DL VG D Q LF F +VRADHP+ R ++S Sbjct: 137 PAQIERA-LETGALDLAVGYF--PDLKKNNFFQQRLFTHYFTCIVRADHPVTRGGNTRLS 193 Query: 117 LANFTAWPHISASRHGHNSGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPE 176 + F + H G + + LE + ++RK L+ P F S + A +D++A P Sbjct: 194 MQQFLEYGHAVVRAEGRSQELYERFLERKRIRRKPALLTPHFMSIPFILARTDLIATVPH 253 Query: 177 LFARWAMQ-HLRLHIFRLPLATPEVEVSQSWHPRRHADPVHKWLRGLVRELCSDGA 231 MQ H + + PLA P ++ Q WH + H D +WLR LV L +D A Sbjct: 254 AVGLSFMQSHANIRVMEPPLALPSFDLKQHWHRKFHNDARSQWLRALVSSLFNDEA 309