BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0421.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z3982 [GEPR] COG0477 Permeases of the major facilitator superfam...   115   4e-26
ECs3543 [GEPR] COG0477 Permeases of the major facilitator superf...   115   4e-26
b2681m [GEPR] COG0477 Permeases of the major facilitator superfa...   112   2e-25
STM2812 [GEPR] COG0477 Permeases of the major facilitator superf...   111   7e-25
CAC3482 [GEPR] COG0477 Permeases of the major facilitator superf...   105   4e-23

>Z3982 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ
           Escherichia coli O157:H7 EDL933
          Length = 394

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 89/127 (70%)

Query: 4   GALLLAGASSGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGI 63
           G +L+  +S  +A++++ +   GL + +AQ +VP AATLAS   RGKVVGT+M+GLLLGI
Sbjct: 88  GGMLITASSQSLAMMILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGI 147

Query: 64  LLSRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLV 123
           LL+R ++G +A   GWR++F  ASV +AL+ +A WRGLP+ K+ THL Y  LLGS+  + 
Sbjct: 148 LLARTVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMF 207

Query: 124 QKHPALR 130
             +  LR
Sbjct: 208 ISNKILR 214


>ECs3543 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs
           Escherichia coli O157:H7
          Length = 394

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 89/127 (70%)

Query: 4   GALLLAGASSGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGI 63
           G +L+  +S  +A++++ +   GL + +AQ +VP AATLAS   RGKVVGT+M+GLLLGI
Sbjct: 88  GGMLITASSQSLAMMILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGI 147

Query: 64  LLSRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLV 123
           LL+R ++G +A   GWR++F  ASV +AL+ +A WRGLP+ K+ THL Y  LLGS+  + 
Sbjct: 148 LLARTVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMF 207

Query: 124 QKHPALR 130
             +  LR
Sbjct: 208 ISNKILR 214


>b2681m [GEPR] COG0477 Permeases of the major facilitator superfamily Eco
           Escherichia coli K12
          Length = 392

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 87/125 (69%)

Query: 6   LLLAGASSGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGILL 65
           +L+  +S  +A++++ +   GL + +AQ +VP AATLAS   RGKVVGT+M+GLLLGILL
Sbjct: 88  MLITASSQSLAMMILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILL 147

Query: 66  SRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLVQK 125
           +R ++G +A   GWR++F  ASV +AL+ +A WRGLP+ K+ THL Y  LLGS+  +   
Sbjct: 148 ARTVAGLLANLGGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFIS 207

Query: 126 HPALR 130
              LR
Sbjct: 208 DKILR 212


>STM2812 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty
           Salmonella typhimurium LT2
          Length = 394

 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 87/127 (68%)

Query: 4   GALLLAGASSGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGI 63
           G +L+  +S  ++++++ +   GL + +AQ +VP AATLA+   RGKVVGT+M+GLLLGI
Sbjct: 88  GGMLITASSQSLSMMILGTALTGLFSVVAQILVPLAATLATPATRGKVVGTIMSGLLLGI 147

Query: 64  LLSRVLSGFVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLV 123
           LL+R ++G +A   GWR++F  AS  +AL+ +A WRGLP+ K+ THL Y  LLGS+  L 
Sbjct: 148 LLARTVAGLLANLGGWRTVFWVASALMALMAVALWRGLPKLKSDTHLNYPQLLGSVFSLF 207

Query: 124 QKHPALR 130
                LR
Sbjct: 208 IHDKLLR 214


>CAC3482 [GEPR] COG0477 Permeases of the major facilitator superfamily Cac
           Clostridium acetobutylicum
          Length = 394

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 86/122 (70%)

Query: 12  SSGIAVLLVASLAIGLSATLAQDIVPAAATLASEQNRGKVVGTVMTGLLLGILLSRVLSG 71
           SS I +L ++S A+G ++ + Q I+P AA L+++++RG+++GTVM+GLL+GIL+SR  SG
Sbjct: 103 SSNIYILTISSFAVGFTSIIPQLIIPLAAQLSNQKDRGRIIGTVMSGLLIGILVSRTFSG 162

Query: 72  FVAEHFGWRSMFVAASVSIALIGIAAWRGLPRFKATTHLPYGALLGSLGKLVQKHPALRR 131
            +  ++GWR +++ A++ +  + IA  + LP  K ++++ Y  LL S+ +L++  P LR 
Sbjct: 163 ILGAYWGWRVVYIIAAIMMIFLMIALRKLLPVSKPSSNVKYIELLKSMFQLIKSEPVLRE 222

Query: 132 AS 133
           AS
Sbjct: 223 AS 224