BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0415.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0560 [R] COG0679 Predicted permeases Bme Brucella melitensis       96   2e-20
MK1560 [R] COG0679 Predicted permeases Mka Methanopyrus kandleri...    60   9e-10
AGc3303 [R] COG0679 Predicted permeases Atu Agrobacterium tumefa...    60   1e-09
SMc00317 [R] COG0679 Predicted permeases Sme Sinorhizobium meliloti    59   4e-09

>BMEI0560 [R] COG0679 Predicted permeases Bme Brucella melitensis
          Length = 311

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 71/119 (59%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           ML    VV PVFALIF G+   K  IL  +A +ELNRFV+YL LPALLFD +A    ++ 
Sbjct: 1   MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSEL 60

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFG 119
               FIAVF +  AV F L   ++ R      D  +D L  +Y N G++GIPL ++AFG
Sbjct: 61  WQPGFIAVFLLSSAVAFALPFLVRLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFG 119


>MK1560 [R] COG0679 Predicted permeases Mka Methanopyrus kandleri AV19
          Length = 298

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 11  VFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADFSNLRFIAVFA 70
           +  L+F+GY  RK  + S +  S LN +V+YL +PAL+F ++ R           + V +
Sbjct: 10  ILGLVFVGYTLRKVGVFSKDTPSHLNAYVVYLAMPALVFTAMLRAPIQGLLQHLKLVVIS 69

Query: 71  IGIAVVFVLTAWIKYRQGA-AAGDIIIDSLGTSYANVGFIGIPLCLLAFGRDGM 123
           + ++V+  L  +   R+ A    D +  +L +   N GF+G P+CL  FG  G+
Sbjct: 70  MLLSVMCALIGFAVARKMARDRRDAMAVALASGLGNTGFLGYPVCLSTFGEPGL 123


>AGc3303 [R] COG0679 Predicted permeases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 312

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           M  I  ++ P F LIF+GY   +     V A   LN F+IY  LPAL F  +++    + 
Sbjct: 1   MADIIGLLLPFFGLIFIGYGAARITKQPVEAMGWLNTFIIYAALPALFFKLVSKTPVEEL 60

Query: 61  SNLRFIA-----VFAIGIAVVFVLTAWIKYRQGAAAGDIIIDSLGTSYANVGFIGIPLCL 115
           + + F+A      + I +A VF++  +++    A   +  I S   SY N+G++G  L L
Sbjct: 61  ARMDFVAASLACTYGIFLA-VFLIGRFVRRNSLA---ETTIQSFAASYGNIGYMGPGLAL 116

Query: 116 LAFGRDGMPP 125
           LA G     P
Sbjct: 117 LALGEKAAVP 126


>SMc00317 [R] COG0679 Predicted permeases Sme Sinorhizobium meliloti
          Length = 320

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 1   MLAIFNVVFPVFALIFLGYLCRKRNILSVNAASELNRFVIYLGLPALLFDSIARLTPADF 60
           M  I  +V P F LIFLGYL  +       A   LN F++YL LPAL F  ++R    + 
Sbjct: 1   MAEITGLVLPFFGLIFLGYLTARLVDHPGEAMGWLNTFIVYLALPALFFKLVSRTPVEEL 60

Query: 61  SNLRFIAVFAIGIAVVFVLTAWIK-YRQGAAAGDIIIDSLGTSYANVGFIGIPLCLLAFG 119
           +   FI        VVF L   I  + +     +  +     +Y N+G++G  L LLA G
Sbjct: 61  TRADFILTSVGTTYVVFALIFAIGLFLRRNTVAEATMQGFAGAYGNIGYMGPGLALLALG 120

Query: 120 RDGMPPC 126
                P 
Sbjct: 121 ETAAVPV 127