BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0411.p (205 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1709_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 137 2e-32 VC2110_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)... 129 4e-30 YPO2756_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 129 4e-30 yfcK_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) E... 125 8e-29 ECs3208_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating... 122 4e-28 >RSc1709_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Rso Ralstonia solanacearum Length = 384 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/213 (44%), Positives = 125/213 (58%), Gaps = 14/213 (6%) Query: 6 AAAPVVILANGMQSAALAQAAGLPLQTIRGQVSHLPAASLPD-LPF---VLCGDGYLTGA 61 A APVV+LAN + + LA A L+ +RGQ++ +P A+L D +P+ V+CGDGYL Sbjct: 169 AHAPVVVLANSLDAVRLAPLASAALKPVRGQLTDVPVAALEDGVPWPRAVVCGDGYLLPR 228 Query: 62 VNG--LVSVGASYDRDNHDTALRADSHAGNLDKLRQLLPGVSP---DIDPDGLSGRVGFR 116 G V VG+S+ D R HA NL +L L P + +DP L G VG R Sbjct: 229 ERGAPTVRVGSSFQPGETDPDARTADHAANLRRLAGLQPAHAAALARVDPARLLGYVGVR 288 Query: 117 CVSADRLPLVGALPDQAALAAGGEVQLRDA----PRWPQLYGLLAYASRGLIWAPLAAEI 172 CVSA+RLPL+GA+ D+AA+ A G +LR PR P LY LAY SRGL W+ L AE+ Sbjct: 289 CVSANRLPLIGAVADEAAIMAPG-FRLRGPHAALPRVPGLYAALAYGSRGLTWSVLGAEL 347 Query: 173 VACALEDEPAPLGKDLLALLDPARFALKAHRKN 205 +A ++ P PL +L A LDP RF ++A R Sbjct: 348 LAAQIDGGPLPLESELAAALDPGRFLMRALRHG 380 >VC2110_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Vch Vibrio cholerae Length = 388 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 112/208 (53%), Gaps = 18/208 (8%) Query: 11 VILANGMQSAALAQAAGLPLQTIRGQVSHLPAA-SLPDLPFVLCGDGYLT--GAVNGLVS 67 V++A+G Q +L+Q A LPL ++GQVSH+P +L + VLC DGY+T NG Sbjct: 177 VVIASGHQFDSLSQTAELPLGKVKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHC 236 Query: 68 VGASYDRDNHDTALRADSHAGNLDKLRQLLPGVSP--DIDPDGLSGRVGFRCVSADRLPL 125 +GASYDR + D + N KL LP + ++D G R G RCVS D LP Sbjct: 237 IGASYDRQHLDATFDPQAQHENAQKLIHCLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPF 296 Query: 126 VGALPDQAALAAGGEVQLRDAPR---------WPQLYGLLAYASRGLIWAPLAAEIVACA 176 VG + + + + Q RD + +PQLY L+ SRGL APL AE++A Sbjct: 297 VGNVGEFSKITE----QYRDLAQQHQAEPIALYPQLYALVGLGSRGLSSAPLMAELLASQ 352 Query: 177 LEDEPAPLGKDLLALLDPARFALKAHRK 204 + +P PLG DLL L P+R ++ RK Sbjct: 353 MCGDPMPLGVDLLEQLHPSRMWVRKLRK 380 >YPO2756_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype Yersinia pestis Length = 435 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 110/218 (50%), Gaps = 19/218 (8%) Query: 2 AAAAAAAPVVILANGMQSAALAQAAGLPLQTIRGQVSHLPAA-SLPDLPFVLCGDGYLT- 59 + AA VILA G + Q LPL +RGQVSH+P L L VLC DGYLT Sbjct: 198 SQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTTPVLSQLQQVLCYDGYLTP 257 Query: 60 -GAVNGLVSVGASYDRDNHDTALRADSHAGNLDKLRQLLPGVS--PDIDPDGLSGRVGFR 116 N +GASY R + T R N ++L + LP VS +D R G R Sbjct: 258 VNPANQHHCIGASYQRGDIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVR 317 Query: 117 CVSADRLPLVGALPDQAALAA-----------GGEVQLRD---APRWPQLYGLLAYASRG 162 C D LP+VGA+PD AA A GGE ++ D AP WP+L+ + SRG Sbjct: 318 CAIRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVWPELFMVGGLGSRG 377 Query: 163 LIWAPLAAEIVACALEDEPAPLGKDLLALLDPARFALK 200 L APL AEI+A + EP PL LA L+P RF ++ Sbjct: 378 LCSAPLVAEILAAQMFGEPLPLDAKTLAALNPNRFWIR 415 >yfcK_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco Escherichia coli K12 Length = 413 Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 6 AAAPVVILANGMQSAALAQAAGLPLQTIRGQVSHLPAA-SLPDLPFVLCGDGYLT--GAV 62 A VV+LANG Q + +Q + LP+ ++ GQVSH+P L +L VLC DGYLT Sbjct: 197 ATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQNPA 256 Query: 63 NGLVSVGASYDRDNHDTALRADSHAGNLDKLRQLLPGV--SPDIDPDGLSGRVGFRCVSA 120 N +GASY R + DTA D N +L P + ++D R G RC + Sbjct: 257 NQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCATR 316 Query: 121 DRLPLVGALPD------QAALAAGGEVQLRDAPRWPQLYGLLAYASRGLIWAPLAAEIVA 174 D LP+VG +PD + A A + + AP + L+ A SRGL APL AEI+A Sbjct: 317 DHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILA 376 Query: 175 CALEDEPAPLGKDLLALLDPARFALK 200 + DEP P+ LA L+P R ++ Sbjct: 377 AQMSDEPIPMDASTLAALNPNRLWVR 402 >ECs3208_2 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ecs Escherichia coli O157:H7 Length = 411 Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 107/206 (51%), Gaps = 11/206 (5%) Query: 6 AAAPVVILANGMQSAALAQAAGLPLQTIRGQVSHLPAA-SLPDLPFVLCGDGYLT--GAV 62 A VV+LANG Q + +Q + LP+ ++ GQVSH+P L L VLC DGYLT Sbjct: 195 ATHSVVVLANGHQISRFSQTSSLPVYSVAGQVSHIPTTPELAKLKQVLCYDGYLTPQNPA 254 Query: 63 NGLVSVGASYDRDNHDTALRADSHAGNLDKLRQLLPGV--SPDIDPDGLSGRVGFRCVSA 120 N +GASY R + +TA D+ N +L P + +D R G RC + Sbjct: 255 NQHHCIGASYHRGSEETAYSEDNQQQNRQRLIDCFPHAQWAKTVDVSKKEARCGVRCATR 314 Query: 121 DRLPLVGALPDQAA----LAAGGEVQLR--DAPRWPQLYGLLAYASRGLIWAPLAAEIVA 174 D LP+VG +PD A A+ E + + AP + L+ A SRGL APL AEI+A Sbjct: 315 DHLPMVGNVPDYEATLVEYASLAEQKDKAVSAPVFDDLFMFAALGSRGLCSAPLCAEILA 374 Query: 175 CALEDEPAPLGKDLLALLDPARFALK 200 + DEP P+ LA L+P R ++ Sbjct: 375 AQMSDEPIPMDASTLAALNPNRLWVR 400