BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0404.p         (183 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

glnQ [E] COG1126 ABC-type polar amino acid transport system, ATP...   134   8e-32
ECs0887 [E] COG1126 ABC-type polar amino acid transport system, ...   134   9e-32
STM1951 [E] COG1126 ABC-type polar amino acid transport system, ...   133   2e-31
ZglnQ [E] COG1126 ABC-type polar amino acid transport system, AT...   132   3e-31
STM0828 [E] COG1126 ABC-type polar amino acid transport system, ...   130   1e-30

>glnQ [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Eco Escherichia coli K12
          Length = 240

 Score =  134 bits (338), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 89/137 (64%), Gaps = 9/137 (6%)

Query: 1   MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60
           MI    + K F   ++LH IDL +A  +VVVIIGPSGSGKSTLLRC N LE        I
Sbjct: 1   MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLE-------EI 53

Query: 61  CNQDLLVDGKMIADHALND--LRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118
            + DL+VDG  + D  +++  +R + GMVFQ F LFPHL+ LENV  GP ++RG  K+EA
Sbjct: 54  TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEA 113

Query: 119 DTLARALLAKVGRRRRG 135
           + LAR LLAKVG   R 
Sbjct: 114 EKLARELLAKVGLAERA 130


>ECs0887 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Ecs Escherichia coli O157:H7
          Length = 240

 Score =  134 bits (338), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 89/137 (64%), Gaps = 9/137 (6%)

Query: 1   MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60
           MI    + K F   ++LH IDL +A  +VVVIIGPSGSGKSTLLRC N LE        I
Sbjct: 1   MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLE-------EI 53

Query: 61  CNQDLLVDGKMIADHALND--LRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118
            + DL+VDG  + D  +++  +R + GMVFQ F LFPHL+ LENV  GP ++RG  K+EA
Sbjct: 54  TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEA 113

Query: 119 DTLARALLAKVGRRRRG 135
           + LAR LLAKVG   R 
Sbjct: 114 EKLARELLAKVGLAERA 130


>STM1951 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Sty Salmonella typhimurium LT2
          Length = 250

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 86/132 (65%), Gaps = 5/132 (3%)

Query: 2   ITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISIC 61
           I V+ L K F G  +LHGIDLEV   +VV IIGPSGSGK+TLLRC N LE  E G+I + 
Sbjct: 4   IEVTNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIKVG 63

Query: 62  NQDLLVDGKMIADHA---LNDLRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118
             D+++D           +  LR  VG VFQSFNLFPH +VLEN+  GP  ++G PK EA
Sbjct: 64  --DIIIDTARPFSQQKGLIRQLRQHVGFVFQSFNLFPHRTVLENIIEGPVIVKGEPKAEA 121

Query: 119 DTLARALLAKVG 130
             LAR LLAKVG
Sbjct: 122 TALARELLAKVG 133


>ZglnQ [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component EcZ Escherichia coli O157:H7 EDL933
          Length = 240

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 88/137 (64%), Gaps = 9/137 (6%)

Query: 1   MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60
           MI    + K F   ++LH IDL +A  + VVIIGPSGSGKSTLLRC N LE        I
Sbjct: 1   MIEFKNVSKHFGPTQVLHNIDLNIAQGEXVVIIGPSGSGKSTLLRCINKLE-------EI 53

Query: 61  CNQDLLVDGKMIADHALND--LRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118
            + DL+VDG  + D  +++  +R + GMVFQ F LFPHL+ LENV  GP ++RG  K+EA
Sbjct: 54  TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEA 113

Query: 119 DTLARALLAKVGRRRRG 135
           + LAR LLAKVG   R 
Sbjct: 114 EKLARELLAKVGLAERA 130


>STM0828 [E] COG1126 ABC-type polar amino acid transport system, ATPase
           component Sty Salmonella typhimurium LT2
          Length = 240

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 88/137 (64%), Gaps = 9/137 (6%)

Query: 1   MITVSKLGKSFSGHRILHGIDLEVAASQVVVIIGPSGSGKSTLLRCCNGLEVAEEGSISI 60
           MI    + K F   ++LH IDL +   +VVVIIGPSGSGKSTLLRC N LE        I
Sbjct: 1   MIEFKNVSKHFGPTQVLHNIDLNIRQGEVVVIIGPSGSGKSTLLRCINKLE-------EI 53

Query: 61  CNQDLLVDGKMIADHALND--LRTQVGMVFQSFNLFPHLSVLENVTVGPRKIRGTPKDEA 118
            + DL+VDG  + D  +++  +R + GMVFQ F LFPHL+ LENV  GP ++RG  K+EA
Sbjct: 54  TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGVKKEEA 113

Query: 119 DTLARALLAKVGRRRRG 135
           +  A+ALLAKVG   R 
Sbjct: 114 EKQAKALLAKVGLAERA 130