BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0403.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr3187_2 [E] COG0765 ABC-type amino acid transport system, perm... 187 1e-47 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 185 9e-47 AF0232 [E] COG0765 ABC-type amino acid transport system, permeas... 178 9e-45 sll1270_2 [E] COG0765 ABC-type amino acid transport system, perm... 178 9e-45 lin0840_2 [E] COG0765 ABC-type amino acid transport system, perm... 174 2e-43 >alr3187_2 [E] COG0765 ABC-type amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 240 Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 98/208 (47%), Positives = 140/208 (67%), Gaps = 11/208 (5%) Query: 11 PDLLHGAIVTVEITAISLVLGCFLGLLVGLGRLDR--SKRLIYGICTAYVTFIRGTPLLV 68 P LL GA+VT+++T +S VLG G L+ L RL + RL AYV F RGTPLLV Sbjct: 20 PTLLQGALVTIQLTILSTVLGLICGTLIALTRLSQFTPARLF---ARAYVDFFRGTPLLV 76 Query: 69 QLFLLFFGLPQ------FDILLPAFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAAR 122 Q+F+++FG+P F ++ GV+ L + + AY++EIVR IQSI+ GQ EAA+ Sbjct: 77 QIFMIYFGIPALAQQLGFTFNFDRWVAGVIALSVNAAAYIAEIVRAGIQSIETGQTEAAK 136 Query: 123 SLGMSSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSY 182 SLG++ MR +I PQA RM+PPLGNEFI+L+K+++LV+++ +L +GQ I++ +Y Sbjct: 137 SLGLNPWLTMRLVIFPQAFRRMLPPLGNEFISLLKDTSLVAVIGFEELFRKGQLIVADNY 196 Query: 183 RSLEVYIAVALVYLVLTSLTSMALQRVE 210 R+ E+Y AVA+VYL LT L S L R+E Sbjct: 197 RAFEIYAAVAIVYLCLTLLASQVLSRLE 224 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 142/209 (67%), Gaps = 1/209 (0%) Query: 6 VFEGWPDLLHGAIVTVEITAISLVLGCFLGLLVGLGRLDRSKRLIYGICTAYVTFIRGTP 65 + + P LL GA+ T+++T++++++G +G+ VG+GRL + R+I + YV F+RGTP Sbjct: 8 IVDNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSK-YRIIRYPSSVYVEFLRGTP 66 Query: 66 LLVQLFLLFFGLPQFDILLPAFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLG 125 L+VQLFL++FGLP+ + F V+ LGI SGAYV+EIVR IQS+ KGQ EAARSLG Sbjct: 67 LMVQLFLVYFGLPELGLEFDRFTAAVIALGINSGAYVAEIVRAGIQSVPKGQYEAARSLG 126 Query: 126 MSSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSL 185 MS +AM +ILPQA ++P LGNEFIAL K+S+L ++ +LM Q I+S ++ S Sbjct: 127 MSHAQAMIYVILPQAFRHILPALGNEFIALAKDSSLAMVIGTVELMRSAQYIVSRTFMSF 186 Query: 186 EVYIAVALVYLVLTSLTSMALQRVEKHLR 214 +Y VAL+Y +T S ++ VE L+ Sbjct: 187 PIYGGVALIYFAITFSVSRLVKFVEGRLK 215 >AF0232 [E] COG0765 ABC-type amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 224 Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 95/203 (46%), Positives = 140/203 (68%), Gaps = 1/203 (0%) Query: 11 PDLLHGAIVTVEITAISLVLGCFLGLLVGLGRLDRSKRLIYGICTAYVTFIRGTPLLVQL 70 PDL GA VT+++T IS+ G +G + GLGR+ ++ L + I TAYV IRGTPLLVQ+ Sbjct: 17 PDLAFGASVTLKLTLISIFFGLIIGTIAGLGRVSKNP-LPFAISTAYVEVIRGTPLLVQI 75 Query: 71 FLLFFGLPQFDILLPAFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGMSSGK 130 +++FGLP I L G++ L I SGAY++EIVR I+SI GQMEAARSLGM+ + Sbjct: 76 LIVYFGLPAIGINLQPEPAGIIALSICSGAYIAEIVRAGIESIPIGQMEAARSLGMTYLQ 135 Query: 131 AMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLEVYIA 190 AMR +I PQA ++P LGNEFIAL+K+S+L+S+++I +L G++I++ ++ + ++ Sbjct: 136 AMRYVIFPQAFRNILPALGNEFIALLKDSSLLSVISIVELTRVGRQIVNTTFNAWTPFLG 195 Query: 191 VALVYLVLTSLTSMALQRVEKHL 213 VAL YL++T S + +K L Sbjct: 196 VALFYLMMTIPLSRLVAYSQKKL 218 >sll1270_2 [E] COG0765 ABC-type amino acid transport system, permease component Syn Synechocystis Length = 255 Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 139/210 (66%), Gaps = 11/210 (5%) Query: 12 DLLHGAIVTVEITAISLVLGCFLGLLVGLGRLDRSK--RLIYGICTAYVTFIRGTPLLVQ 69 +L G+I+TV +TA S+ G G V + + K +LI+ I YV F RGTP+LVQ Sbjct: 34 NLFKGSILTVLLTAFSVFFGLIGGTGVAIALISDIKPLQLIFRI---YVEFFRGTPMLVQ 90 Query: 70 LFLLFFGLPQF------DILLPAFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARS 123 LF+++FGLP I + F ++ L + AY++EI+RG IQSID+GQ EA S Sbjct: 91 LFIIYFGLPALFKEIGLGITIDRFPAAIIALSLNVAAYLAEIIRGGIQSIDQGQWEACES 150 Query: 124 LGMSSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYR 183 LGMS + M+ +I PQA R++PPLGNEFI LIK+++L +++ +L EGQ I++ +YR Sbjct: 151 LGMSPWQTMKEVIFPQAFRRILPPLGNEFITLIKDTSLTAVIGFQELFREGQLIVATTYR 210 Query: 184 SLEVYIAVALVYLVLTSLTSMALQRVEKHL 213 + EVYIAVALVYL+LT+++S + +E ++ Sbjct: 211 AFEVYIAVALVYLLLTTISSFVFKWLENYM 240 >lin0840_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 212 Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 135/208 (64%), Gaps = 2/208 (0%) Query: 8 EGWPDLLHGAIVTVEITAISLVLGCFLGLLVGLGRLDRSKRLIYGICTAYVTFIRGTPLL 67 WP LL G +T+ + +SL++ +G+ G ++ SK ++ GI T YV RGTPL+ Sbjct: 4 SSWPALLAGMWLTIRLAVVSLIIAFIIGITFGFMKVSNSK-ILRGIATVYVDIFRGTPLI 62 Query: 68 VQLFLLFFGLPQ-FDILLPAFLCGVLGLGIYSGAYVSEIVRGAIQSIDKGQMEAARSLGM 126 VQ F +FG+P D +P FL GV+ L + +GAY+ EIVRG IQS+DKGQMEAARSLG+ Sbjct: 63 VQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGL 122 Query: 127 SSGKAMRTIILPQAIVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGQKIISVSYRSLE 186 KAM ++LPQAI MIP N+F+ +K+++++S + + +L G+ I++ ++ S Sbjct: 123 PHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW 182 Query: 187 VYIAVALVYLVLTSLTSMALQRVEKHLR 214 ++ + ++YL++ ++ + R+E+ LR Sbjct: 183 TWLIIGIMYLIVITILTKVSDRLERRLR 210