BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0397.p         (194 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc478 [K] COG1309 Transcriptional regulator Atu Agrobacterium t...   278   5e-75
mlr4666 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...   240   1e-63
MA1771 [K] COG1309 Transcriptional regulator Mac Methanosarcina ...    96   4e-20

>AGc478 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 192

 Score =  278 bits (711), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 127/190 (66%), Positives = 158/190 (83%)

Query: 1   MTDSSNTADSILRCAQTLIIAGGYNGFSYADIAKVIGIRNASIHHHFPGKAVLVRTLVAR 60
           M +  + AD IL+CA+TLII GGYN FSYADI++V+GIRNASIHHHFP K+ LV  LV++
Sbjct: 1   MKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 60

Query: 61  YREEMQAGVAKLEQHVSDPLEQLRAYAGFWENCIADASSSFCVCALLATEMPILPEEIAL 120
           YR+E +AG+A+LE+++SDPLEQLRAY G+WE CIADA+  FCVCALLA+E+P+LPE + L
Sbjct: 61  YRQEAEAGIAELEKNISDPLEQLRAYIGYWEGCIADATHPFCVCALLASEIPVLPETVVL 120

Query: 121 EVRAHFRALATWLTAVFTRGAKQGSLGLTGSAEAEADIFMATVHGAMLSARAYGEAKMFG 180
           EVRAHFR+L+ WLTAV  RG  QG L LTG+A A A+IFMATVHGAMLSARA+G+A  FG
Sbjct: 121 EVRAHFRSLSDWLTAVLERGIAQGRLVLTGTARANAEIFMATVHGAMLSARAHGDAATFG 180

Query: 181 AIVNPVLARV 190
           AI  P+L R+
Sbjct: 181 AITRPMLERI 190


>mlr4666 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 195

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 142/190 (74%)

Query: 1   MTDSSNTADSILRCAQTLIIAGGYNGFSYADIAKVIGIRNASIHHHFPGKAVLVRTLVAR 60
           M+  SNTAD IL  A+T I+AGGYNGFSYADIA+V+GIR ASIHHHFP K  LV+TL+ R
Sbjct: 1   MSKPSNTADEILAAARTFIVAGGYNGFSYADIAEVVGIRKASIHHHFPSKVDLVQTLLKR 60

Query: 61  YREEMQAGVAKLEQHVSDPLEQLRAYAGFWENCIADASSSFCVCALLATEMPILPEEIAL 120
           Y E+   G+A LE+ V  P E LR YAG W  CI DAS  FCVCALLA+E+P LP ++A+
Sbjct: 61  YLEDAVIGLAGLERDVPGPPELLRTYAGIWARCIEDASMPFCVCALLASELPALPPQLAV 120

Query: 121 EVRAHFRALATWLTAVFTRGAKQGSLGLTGSAEAEADIFMATVHGAMLSARAYGEAKMFG 180
           EVRA+F+ L+ WLT V  RGA++G+L ++ S   EA+ FMATVHGAMLSARAYG+   FG
Sbjct: 121 EVRAYFQFLSGWLTGVIERGAEKGTLVISASPRIEAEAFMATVHGAMLSARAYGDVLTFG 180

Query: 181 AIVNPVLARV 190
            I+ P L ++
Sbjct: 181 MILTPTLQKL 190


>MA1771 [K] COG1309 Transcriptional regulator Mac Methanosarcina
           acetivorans str.C2A
          Length = 206

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 1/182 (0%)

Query: 1   MTDSSNTADSILRCAQTLIIAGGYNGFSYADIAKVIGIRNASIHHHFPGKAVLVRTLVAR 60
           MTD S T   I   A+  +   GYNGFSY DI++ +GI+N+SIHH++P K  LV  L+  
Sbjct: 15  MTDISQTNQQIRHYARHFLQCQGYNGFSYKDISRKLGIKNSSIHHYYPKKEDLVAALLEE 74

Query: 61  YREEMQAGVAKLEQHVSDPLEQLRAYAGFWENCIADASSSFCVCALLATEMPILPEEIAL 120
            R+ +   +A++ +      EQL+ Y  +      D   S C    +  +   LPEE+  
Sbjct: 75  SRKNLVEHIARIVESGGSAREQLQYYFDYALKEF-DEGKSICPPGSVILDFEELPEEVKK 133

Query: 121 EVRAHFRALATWLTAVFTRGAKQGSLGLTGSAEAEADIFMATVHGAMLSARAYGEAKMFG 180
           +       +  W++ V   G ++G    +   EA A++ + T+ GA L +   G   +  
Sbjct: 134 QNLLLLHCILDWISKVLRTGLEKGEFNFSDPVEARAELVVETLMGARLLSSIQGRKTLVR 193

Query: 181 AI 182
           +I
Sbjct: 194 SI 195