BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0380.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa2075 [E] COG0747 ABC-type dipeptide transport system, peripla...    66   2e-11
AGpT144 [E] COG0747 ABC-type dipeptide transport system, peripla...    62   2e-10
BMEII0504 [E] COG0747 ABC-type dipeptide transport system, perip...    62   3e-10
AGl2772 [E] COG0747 ABC-type dipeptide transport system, peripla...    62   3e-10
AGl2768 [E] COG0747 ABC-type dipeptide transport system, peripla...    61   5e-10

>SMa2075 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Sme Sinorhizobium meliloti
          Length = 543

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 53/97 (54%)

Query: 1   VTRAYWSDSVGKNIPWSNGSGYRNAEADKLIEQAQSSASQTERVALFRKLQQRVQTDLPS 60
           V R YWS +    +P++NGS Y N E D+L+E A       +R+ LF + Q+ V  DLP+
Sbjct: 445 VQRLYWSKNFKPGVPFTNGSKYSNPEVDRLLETAAVEIDPKKRLELFNEFQKLVVEDLPT 504

Query: 61  IPLLELHFFTVQAANLKDTVAGVDQIYSSLKNAWFDN 97
           + ++     TV    +K+   GV+ ++S+  + + D 
Sbjct: 505 LDIVTPAVITVYDKRVKNLKLGVEHLWSNGADIYLDG 541


>AGpT144 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 531

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%)

Query: 1   VTRAYWSDSVGKNIPWSNGSGYRNAEADKLIEQAQSSASQTERVALFRKLQQRVQTDLPS 60
           + R YWS ++ K +PWSN SGY NAE D++ E+        +R   F + Q  +  DLP+
Sbjct: 435 IQRGYWSKNIKKGVPWSNHSGYSNAEVDEIFEKGSIEIDPAKRKEYFVRFQHILHRDLPA 494

Query: 61  IPLLELHFFTVQAANLKD 78
           + L++    T+    L +
Sbjct: 495 VNLVQFQNLTLYRKTLHN 512


>BMEII0504 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Bme Brucella melitensis
          Length = 537

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 13  NIPWSNGSGYRNAEADKLIEQAQSSASQTERVALFRKLQQRVQTDLPSIPLLELHFFTVQ 72
            +P+SN  GY NAE D LI +A S+  + ER AL++K QQ V+ DLP I + E  F TV 
Sbjct: 453 GVPFSNQGGYANAELDALIAKAASTTDEKERTALYQKFQQMVEADLPLINVAEWGFITVA 512

Query: 73  AANLKDT 79
           +  +K+ 
Sbjct: 513 SERVKNV 519


>AGl2772 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 531

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%)

Query: 1   VTRAYWSDSVGKNIPWSNGSGYRNAEADKLIEQAQSSASQTERVALFRKLQQRVQTDLPS 60
           V R YWS +    +P+SN S Y N E D+L+E A       +R A F++ Q  V  DLP 
Sbjct: 433 VQRVYWSKNFKIGLPFSNASHYANPEVDRLLEAAAVEPDIEKRAAFFKEFQAVVAKDLPV 492

Query: 61  IPLLELHFFTVQAANLKDTVAGVDQIYSSLKNAW 94
           I L+      V +  +KD   G + +  +L  AW
Sbjct: 493 INLVSPIQPVVGSVRIKDYATGAEGLSGNLAKAW 526


>AGl2768 [E] COG0747 ABC-type dipeptide transport system, periplasmic
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 529

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%)

Query: 1   VTRAYWSDSVGKNIPWSNGSGYRNAEADKLIEQAQSSASQTERVALFRKLQQRVQTDLPS 60
           V R YWSD +    P+ N + Y N   D L   A     +T+R   F ++Q+ V  DLP+
Sbjct: 433 VQRLYWSDGIKNPAPYVNAAHYNNPTVDDLFRAAAIEVDETKRAGQFHEIQKVVGDDLPN 492

Query: 61  IPLLELHFFTVQAANLKDTVAGVDQIYSSLKNAW 94
             ++ L    ++  +LK  V  +D  Y  L  AW
Sbjct: 493 FSIVALPTVILRNTSLKSLVTTIDIAYGDLSTAW 526