BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0371.p         (188 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2309 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp...   259   2e-69
RSp1509 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...   146   2e-35

>PA2309 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Pae Pseudomonas
           aeruginosa
          Length = 340

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 152/182 (83%), Gaps = 2/182 (1%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSR LQ A+AKQWGD Q+++LDK +VA+PHPDA AA++ GGTE++ HF NPPFQDQ LA
Sbjct: 155 VQSRFLQYAAAKQWGDKQFDRLDKYTVALPHPDATAALVAGGTELTGHFSNPPFQDQALA 214

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
            NPK H+VL+SY++LG P+S TVL+ATEKFR+DNPKTY+AF++AL EAA F   +   AA
Sbjct: 215 -NPKVHVVLDSYELLG-PNSPTVLFATEKFRQDNPKTYRAFVEALKEAAAFAQNDKAAAA 272

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           DTYIRV+ AKIDR  LLKII NP+V+F + P+NTYPLAEF++RVGAI+NKPAS +DYFF 
Sbjct: 273 DTYIRVTGAKIDRAALLKIIANPQVEFSVTPKNTYPLAEFLYRVGAIRNKPASWQDYFFQ 332

Query: 181 DA 182
           D 
Sbjct: 333 DG 334


>RSp1509 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Rso Ralstonia
           solanacearum
          Length = 346

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 110/184 (59%), Gaps = 2/184 (1%)

Query: 5   VLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELAGNPK 64
           VLQ+A+AK +GD Q+NKLD I+V +PHPDA A ++ GG++I++H  +PPF   E A  P 
Sbjct: 165 VLQMAAAKAFGDKQFNKLDPITVPLPHPDATAVMLAGGSQINSHMASPPFSYAE-AAAPG 223

Query: 65  AHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAADTYI 124
            H V N+  VLG   +  + Y ++KF + NPK   AF+ ALDEA   IA +  KAA  YI
Sbjct: 224 LHRVFNTVDVLGN-ITLDMTYTSKKFYEANPKLSAAFVAALDEANALIARDKAKAAQIYI 282

Query: 125 RVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFDDAHI 184
             S  K   + + KI+ +P+ +F   P      AEFM RVG +K KPAS KD FF     
Sbjct: 283 AQSKVKSSPDEVKKILDDPDSRFTTTPVGVAHYAEFMQRVGTVKGKPASWKDLFFPTVQN 342

Query: 185 NGGS 188
             GS
Sbjct: 343 RQGS 346