BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0363.p         (198 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0077 [T] COG5000 Signal transduction histidine kinase involve...   135   4e-32
NMB0114 [T] COG5000 Signal transduction histidine kinase involve...    69   1e-11
NMA0160 [T] COG5000 Signal transduction histidine kinase involve...    68   1e-11

>RSc0077 [T] COG5000 Signal transduction histidine kinase involved in
           nitrogen fixation and metabolism regulation Rso
           Ralstonia solanacearum
          Length = 811

 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 101/135 (74%), Gaps = 3/135 (2%)

Query: 10  VVGGGVI---SILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLTRLYKRY 66
           VV G ++    +L+ LLA+AS N+  FD+++  L  +N +  + L++++  L+  L  R 
Sbjct: 14  VVAGTIVFLAIVLVGLLAAASANTEFFDRYFTLLYKVNLVIGVLLVVIIGGLMLALALRA 73

Query: 67  RRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALESGLNLGR 126
           RRGKFG++L+ +L + F ++G+LPG +IYLVS+QFVSRSIESWFDV++E+ALE+GLNLGR
Sbjct: 74  RRGKFGTRLMTKLAVFFGVVGVLPGVLIYLVSLQFVSRSIESWFDVKVESALEAGLNLGR 133

Query: 127 NALDSSLTDLASRGR 141
             +D+SL +L ++GR
Sbjct: 134 TTMDASLAELQNKGR 148


>NMB0114 [T] COG5000 Signal transduction histidine kinase involved in
           nitrogen fixation and metabolism regulation Nme
           Neisseria meningitidis MC58
          Length = 706

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 67/113 (59%)

Query: 18  ILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLTRLYKRYRRGKFGSKLLA 77
           +LL+ L +A+ +++    ++ W++  +A+  + L  ++   +  L K  R G FGS++  
Sbjct: 14  VLLYGLTAATGSTSSLADYFWWIVAFSAMLLLVLSAVLARYVILLLKDRRDGVFGSQIAK 73

Query: 78  RLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALESGLNLGRNALD 130
           RL  +F L+ +LPG  ++ VS QF++ +I SWF      ALE  LNL ++AL+
Sbjct: 74  RLSGMFTLVAVLPGVFLFGVSAQFINGTINSWFGNDTHEALERSLNLSKSALN 126


>NMA0160 [T] COG5000 Signal transduction histidine kinase involved in
           nitrogen fixation and metabolism regulation NmA
           Neisseria meningitidis Z2491
          Length = 706

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 67/113 (59%)

Query: 18  ILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLTRLYKRYRRGKFGSKLLA 77
           +LL+ L +A+ +++    ++ W++  +A+  + L  ++   +  L K  R G FGS++  
Sbjct: 14  VLLYGLTAATGSTSSLADYFWWIVAFSAMLLLVLSAVLARYVILLLKDRRDGVFGSQIAK 73

Query: 78  RLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALESGLNLGRNALD 130
           RL  +F L+ +LPG  ++ VS QF++ +I SWF      ALE  LNL ++AL+
Sbjct: 74  RLSGMFTLVAVLPGVFLFGVSAQFINGTINSWFGNDTHEALERSLNLSKSALN 126