BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0355.p         (199 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3297 [S] COG1297 Predicted membrane protein Rso Ralstonia sol...   237   1e-62
PA3934 [S] COG1297 Predicted membrane protein Pae Pseudomonas ae...   236   3e-62
Cj0204 [S] COG1297 Predicted membrane protein Cje Campylobacter ...   223   2e-58
NMA0207 [S] COG1297 Predicted membrane protein NmA Neisseria men...   221   9e-58
NMB0060 [S] COG1297 Predicted membrane protein Nme Neisseria men...   221   1e-57

>RSc3297 [S] COG1297 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 683

 Score =  237 bits (604), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 137/158 (86%), Gaps = 4/158 (2%)

Query: 12  NMAELTLRGVILGALITIVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFGSASILEN 71
            + ELTLRG++LGA+IT++FTASNVYLGLKVGLTFSSAIPAAVISMAVLR  G  +ILEN
Sbjct: 14  TLPELTLRGMLLGAVITVIFTASNVYLGLKVGLTFSSAIPAAVISMAVLRAIGGTNILEN 73

Query: 72  NMVQTQASAAGTLSAVIFILPGLVMIGHWQGFPYWQTFGICAAGGMLGVLFTIPLRRVMV 131
           NMVQTQASAAGTLS+VIFILPGLVMIGHWQGFP+W TFG+C AGGMLGV+FTIPLR  MV
Sbjct: 74  NMVQTQASAAGTLSSVIFILPGLVMIGHWQGFPFWLTFGVCVAGGMLGVVFTIPLRHAMV 133

Query: 132 VQSELPYPEGLAAAEILRVGNA---DTASPXPN-VPTA 165
           V+++LPYPEG+AAAEILR G+    D  +P  + VP A
Sbjct: 134 VETDLPYPEGVAAAEILRAGSGHATDDGAPDDDAVPAA 171


>PA3934 [S] COG1297 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 678

 Score =  236 bits (601), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/152 (77%), Positives = 136/152 (89%), Gaps = 1/152 (0%)

Query: 10  QYNMAELTLRGVILGALITIVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFGSASIL 69
           +  + ELTLRG+ILGALIT+VFTASNVYLGLKVGLTF+S+IPAAVISMAVLR F  A+IL
Sbjct: 8   ELTLPELTLRGLILGALITVVFTASNVYLGLKVGLTFASSIPAAVISMAVLRYFSGANIL 67

Query: 70  ENNMVQTQASAAGTLSAVIFILPGLVMIGHWQGFPYWQTFGICAAGGMLGVLFTIPLRRV 129
           ENNMVQTQASAAGTLS++IFILPGL+MIG+W GFP+WQT  IC+ GG+LGVL+TIPLRRV
Sbjct: 68  ENNMVQTQASAAGTLSSIIFILPGLLMIGYWSGFPFWQTAAICSIGGILGVLYTIPLRRV 127

Query: 130 MVVQSELPYPEGLAAAEILRVGNADTASPXPN 161
           MVVQSELPYPEG+AAAEILRVG+ D A    +
Sbjct: 128 MVVQSELPYPEGVAAAEILRVGS-DGAEDEED 158


>Cj0204 [S] COG1297 Predicted membrane protein Cje Campylobacter jejuni
          Length = 665

 Score =  223 bits (568), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 128/149 (85%)

Query: 10  QYNMAELTLRGVILGALITIVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFGSASIL 69
           + N+ ELTLRG+ILG+++TI+FTASNVYLGLKVGLTFSS+IPA VISMAVL LF +++IL
Sbjct: 5   KQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSSIPAVVISMAVLSLFKTSNIL 64

Query: 70  ENNMVQTQASAAGTLSAVIFILPGLVMIGHWQGFPYWQTFGICAAGGMLGVLFTIPLRRV 129
           ENNMVQTQASAAGTLS+VIF++PGL M G+W  FP WQTF IC  GG LGVLFTIPLRR 
Sbjct: 65  ENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQTFMICLCGGGLGVLFTIPLRRT 124

Query: 130 MVVQSELPYPEGLAAAEILRVGNADTASP 158
           MVV+S+L YPEG AAAEIL+V N D +S 
Sbjct: 125 MVVESKLAYPEGRAAAEILKVANKDQSSK 153


>NMA0207 [S] COG1297 Predicted membrane protein NmA Neisseria meningitidis
           Z2491
          Length = 672

 Score =  221 bits (563), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 127/143 (88%)

Query: 15  ELTLRGVILGALITIVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFGSASILENNMV 74
           ELTLRG+ILGALIT++FTASNVYLGLKVGLTF+S+IPAAVISMAVL+ F  ++ILENNMV
Sbjct: 14  ELTLRGMILGALITVIFTASNVYLGLKVGLTFASSIPAAVISMAVLKFFKGSNILENNMV 73

Query: 75  QTQASAAGTLSAVIFILPGLVMIGHWQGFPYWQTFGICAAGGMLGVLFTIPLRRVMVVQS 134
           QTQASAAGTLS +IF+LPGL+M G+W GFP+WQT  +C AGG+LGV+FTIPLR  MVV+S
Sbjct: 74  QTQASAAGTLSTIIFVLPGLLMAGYWSGFPFWQTTLLCIAGGILGVIFTIPLRYAMVVKS 133

Query: 135 ELPYPEGLAAAEILRVGNADTAS 157
           +LPYPEG+AAAEIL+VG  +   
Sbjct: 134 DLPYPEGVAAAEILKVGGHEEGD 156


>NMB0060 [S] COG1297 Predicted membrane protein Nme Neisseria meningitidis
           MC58
          Length = 672

 Score =  221 bits (562), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 127/143 (88%)

Query: 15  ELTLRGVILGALITIVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFGSASILENNMV 74
           ELTLRG+ILGALIT++FTASNVYLGLKVGLTF+S+IPAAVISMAVL+ F  ++ILENNMV
Sbjct: 14  ELTLRGMILGALITVIFTASNVYLGLKVGLTFASSIPAAVISMAVLKFFKGSNILENNMV 73

Query: 75  QTQASAAGTLSAVIFILPGLVMIGHWQGFPYWQTFGICAAGGMLGVLFTIPLRRVMVVQS 134
           QTQASAAGTLS +IF+LPGL+M G+W GFP+WQT  +C AGG+LGV+FTIPLR  MVV+S
Sbjct: 74  QTQASAAGTLSTIIFVLPGLLMAGYWSGFPFWQTTLLCIAGGILGVIFTIPLRYAMVVKS 133

Query: 135 ELPYPEGLAAAEILRVGNADTAS 157
           +LPYPEG+AAAEIL+VG  +   
Sbjct: 134 DLPYPEGVAAAEILKVGGHEEGD 156