BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0352.p         (80 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0340 [S] COG2960 Uncharacterized protein conserved in bacteri...   113   1e-25
NMA2081 [S] COG2960 Uncharacterized protein conserved in bacteri...   101   4e-22
NMB0404 [S] COG2960 Uncharacterized protein conserved in bacteri...    99   3e-21
PA5289 [S] COG2960 Uncharacterized protein conserved in bacteria...    67   1e-11
STM3196 [S] COG2960 Uncharacterized protein conserved in bacteri...    64   8e-11

>RSc0340 [S] COG2960 Uncharacterized protein conserved in bacteria Rso
          Ralstonia solanacearum
          Length = 87

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 68/80 (85%)

Query: 1  MDKPQFFEDIQSKINKAIENSPAKDIEKNVKAMLSQGFSKLDLVTREEFDIQAQVLAKTR 60
          M     F D Q+++++A+ NSPA DIEKNV+AM++QGFSKLDLVTREEFD+Q+QVLA+TR
Sbjct: 1  MKPTDLFTDFQNRVSEALRNSPAADIEKNVRAMMAQGFSKLDLVTREEFDVQSQVLARTR 60

Query: 61 AKLEELEARVAELEARQKAS 80
          A+LEELE RVA+LEA+ K S
Sbjct: 61 ARLEELETRVAQLEAQLKTS 80


>NMA2081 [S] COG2960 Uncharacterized protein conserved in bacteria NmA
          Neisseria meningitidis Z2491
          Length = 117

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 61/77 (79%)

Query: 1  MDKPQFFEDIQSKINKAIENSPAKDIEKNVKAMLSQGFSKLDLVTREEFDIQAQVLAKTR 60
          M   Q FE++ SKI++ I NSPAKD+EKN+KAML   F+++DLVTREEFDIQ QVL KTR
Sbjct: 12 MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLVTREEFDIQQQVLIKTR 71

Query: 61 AKLEELEARVAELEARQ 77
           KL  LEAR+A+LEA Q
Sbjct: 72 TKLAALEARLAKLEAAQ 88


>NMB0404 [S] COG2960 Uncharacterized protein conserved in bacteria Nme
          Neisseria meningitidis MC58
          Length = 106

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 60/77 (77%)

Query: 1  MDKPQFFEDIQSKINKAIENSPAKDIEKNVKAMLSQGFSKLDLVTREEFDIQAQVLAKTR 60
          M   Q FE++ SKI++ I NSPAKD+EKN+KAML   F+++DLVTREEFDIQ QVL KTR
Sbjct: 1  MFGKQLFEEVGSKISETIANSPAKDVEKNIKAMLGGAFNRMDLVTREEFDIQQQVLIKTR 60

Query: 61 AKLEELEARVAELEARQ 77
           KL  LEAR+ +LEA Q
Sbjct: 61 TKLAALEARLEKLEAAQ 77


>PA5289 [S] COG2960 Uncharacterized protein conserved in bacteria Pae
          Pseudomonas aeruginosa
          Length = 86

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query: 22 PAKDIEKNVKAMLSQGFSKLDLVTREEFDIQAQVLAKTRAKLEELEARVAELEAR 76
          P  ++E   +A++   FSKLDLV+REEFD Q  VLA+TRA+LE LEA+VAELE++
Sbjct: 26 PKAELESQFRALMQSAFSKLDLVSREEFDSQMLVLARTRARLEALEAKVAELESK 80


>STM3196 [S] COG2960 Uncharacterized protein conserved in bacteria Sty
           Salmonella typhimurium LT2
          Length = 119

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 23  AKDIEKNVKAMLSQGFSKLDLVTREEFDIQAQVLAKTRAKLEELEARVAELEARQKA 79
            +DIEK ++  L    ++LDLV+REEFD+Q QVL +TR KL  LE R++ELEAR K 
Sbjct: 46  GEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKP 102