BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0348.p         (112 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstoni...   185   3e-47
PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomon...   171   3e-43
mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhiz...   165   2e-41
AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobact...   164   4e-41
CC1968 Non COG                                                        163   7e-41

>RSc0342 [E] COG0347 Nitrogen regulatory protein PII Rso Ralstonia
           solanacearum
          Length = 112

 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 100/112 (89%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLI AIIKPFKLDEVREALS +GV GITVTEVKGFGRQKGHTELYRGAEY+VDFLPK K
Sbjct: 1   MKLIMAIIKPFKLDEVREALSQVGVSGITVTEVKGFGRQKGHTELYRGAEYIVDFLPKVK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IE AV D ++ERA+EAIE +ARTGKIGDGKIFV D+  VIRIRTGETG DAL
Sbjct: 61  IEVAVPDDVLERAVEAIEKSARTGKIGDGKIFVTDVEQVIRIRTGETGGDAL 112


>PA5288 [E] COG0347 Nitrogen regulatory protein PII Pae Pseudomonas
           aeruginosa
          Length = 112

 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKL+TAIIKPFKLD+VRE+LS IGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKLVTAIIKPFKLDDVRESLSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           I+ A+ D  ++R +EAI  AA TGKIGDGKIFV +L   IRIRTGET  DA+
Sbjct: 61  IDVAIADDQLDRVIEAITKAANTGKIGDGKIFVVNLEQAIRIRTGETDTDAI 112


>mll0345 [E] COG0347 Nitrogen regulatory protein PII Mlo Mesorhizobium loti
          Length = 112

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 94/112 (83%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK I AIIKPFKLDEV+EAL   G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKKIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IE  + D  VE A+EAI  AA+TG+IGDGKIFV ++ +V+RIRTGETG DA+
Sbjct: 61  IEVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDAV 112


>AGc3252 [E] COG0347 Nitrogen regulatory protein PII Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 157

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 93/112 (83%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK I AIIKPFKLDEV+EAL  +G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPK K
Sbjct: 46  MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK 105

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           +E  + D   E  +EAI  AA+TG+IGDGKIFV ++ +VIRIRTGETG DA+
Sbjct: 106 VEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNIEEVIRIRTGETGVDAI 157


>CC1968 Non COG
          Length = 112

 Score =  163 bits (413), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 94/112 (83%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MK I A+IKPFKLDEV+EAL  +GVQG+TV E KG+GRQKGHTELYRGAEYVVDFLPK K
Sbjct: 1   MKKIEAVIKPFKLDEVKEALQDMGVQGMTVLEAKGYGRQKGHTELYRGAEYVVDFLPKIK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           +E  V+DS +E ALEAI  AARTG+IGDGKIFV ++ +VIRIRTGE G  A+
Sbjct: 61  VEVVVEDSQLEPALEAITRAARTGRIGDGKIFVSEIAEVIRIRTGENGPAAV 112