BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0343.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0347 [G] COG1925 Phosphotransferase system, HPr-related prote...   119   1e-27
NMB2045 [G] COG1925 Phosphotransferase system, HPr-related prote...   113   1e-25
NMA0391 [G] COG1925 Phosphotransferase system, HPr-related prote...   113   1e-25
PA4466 [G] COG1925 Phosphotransferase system, HPr-related protei...    96   3e-20
XF1403 [G] COG1925 Phosphotransferase system, HPr-related protei...    88   6e-18

>RSc0347 [G] COG1925 Phosphotransferase system, HPr-related proteins Rso
          Ralstonia solanacearum
          Length = 89

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 71/89 (79%)

Query: 1  MIQKELEIINKLGLHARASAKFTQLASKYKCEVWMTFNKRRVNAKSIMGVMMLAAGKGTK 60
          M+Q+++ IINKLGLHARASAK TQLASK+  ++ M+ N R+V+AKSIMGVMMLAAG G+ 
Sbjct: 1  MLQRDITIINKLGLHARASAKLTQLASKFDSQIKMSRNGRQVDAKSIMGVMMLAAGIGST 60

Query: 61 VLLETEGDDEQDCFNALEALILDRFGEGQ 89
          V LE EG DEQ   + L ALI DRFGEG+
Sbjct: 61 VTLEIEGPDEQAAMDGLVALIGDRFGEGE 89


>NMB2045 [G] COG1925 Phosphotransferase system, HPr-related proteins Nme
          Neisseria meningitidis MC58
          Length = 89

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 1  MIQKELEIINKLGLHARASAKFTQLASKYKCEVWMTFNKRRVNAKSIMGVMMLAAGKGTK 60
          M+++ +EIINKLGLHARAS KFTQ AS++K EVW+T N  RVN KSIMG+MMLAA KGT 
Sbjct: 1  MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNGKSIMGLMMLAAAKGTV 60

Query: 61 VLLETEGDDEQDCFNALEALILDRFGEGQ 89
          + LET+G DE +   AL  LI   FGEG+
Sbjct: 61 IELETDGADEAEAMRALTDLINGYFGEGE 89


>NMA0391 [G] COG1925 Phosphotransferase system, HPr-related proteins NmA
          Neisseria meningitidis Z2491
          Length = 89

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%)

Query: 1  MIQKELEIINKLGLHARASAKFTQLASKYKCEVWMTFNKRRVNAKSIMGVMMLAAGKGTK 60
          M+++ +EIINKLGLHARAS KFTQ AS++K EVW+T N  RVN KSIMG+MMLAA KGT 
Sbjct: 1  MLKQSIEIINKLGLHARASNKFTQTASQFKSEVWVTKNDSRVNGKSIMGLMMLAAAKGTV 60

Query: 61 VLLETEGDDEQDCFNALEALILDRFGEGQ 89
          + LET+G DE +   AL  LI   FGEG+
Sbjct: 61 IELETDGADEAEAMRALTDLINGYFGEGE 89


>PA4466 [G] COG1925 Phosphotransferase system, HPr-related proteins Pae
          Pseudomonas aeruginosa
          Length = 90

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 62/90 (68%), Gaps = 1/90 (1%)

Query: 1  MIQKELEIINKLGLHARASAKFTQLASKYKCEVWMTFNKRR-VNAKSIMGVMMLAAGKGT 59
          M   E+ IINKLGLHARA+AKF  +A +Y C+V +  N    V+ KSIM VMMLAAGKGT
Sbjct: 1  MPALEITIINKLGLHARAAAKFVGVAGRYPCQVRVGRNPESCVDGKSIMAVMMLAAGKGT 60

Query: 60 KVLLETEGDDEQDCFNALEALILDRFGEGQ 89
           + L TEG+ E +  NAL  LI +RF EG+
Sbjct: 61 NLHLHTEGEQEDEALNALVELINNRFDEGE 90


>XF1403 [G] COG1925 Phosphotransferase system, HPr-related proteins Xfa
          Xylella fastidiosa 9a5c
          Length = 95

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 57/87 (65%)

Query: 1  MIQKELEIINKLGLHARASAKFTQLASKYKCEVWMTFNKRRVNAKSIMGVMMLAAGKGTK 60
          M++ EL + NKLGLHARA+AK  Q  SK++    ++   R VNAKSIMGVM+LAA +GT 
Sbjct: 7  MLEHELIVTNKLGLHARATAKLVQTMSKFQSNTTLSTKGREVNAKSIMGVMLLAASQGTV 66

Query: 61 VLLETEGDDEQDCFNALEALILDRFGE 87
          + +  +G+DE     AL  L  +RF E
Sbjct: 67 IRVRIDGEDEHTAMQALSELFENRFNE 93