BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0342.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0348 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS syst...   159   2e-39
NMA0392 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS syst...   119   2e-27
NMB2044 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS syst...   119   4e-27
XF1402 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS syste...    69   6e-12
lin1002 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS syst...    61   8e-10

>RSc0348 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) Rso Ralstonia solanacearum
          Length = 586

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 97/125 (77%)

Query: 4   FTLHGIPVSKGIAIGRAHLLAPAALDVKHYLIPEEQVEAEVLRLKNAIAAVHQELQIIRD 63
           FTLHGIPVS+GIAIGRAH+LA AALDV HYL+ E++++AEV RL+ A  AV  EL +++ 
Sbjct: 3   FTLHGIPVSRGIAIGRAHMLARAALDVSHYLVDEDKLDAEVERLRAARTAVRAELVLLKR 62

Query: 64  DLPKEAPPELGAFIDVHALILSDPMLAEVPLNIIRHRYYNAEWALVTQIDGLSAQFDEIE 123
           +LP +AP E+GAF+DVH +IL D +LA+ P  +I  R YNAEWAL TQ++ L  QF EIE
Sbjct: 63  ELPTDAPEEMGAFLDVHRMILDDALLAQAPETLIHQRRYNAEWALTTQLEELMRQFGEIE 122

Query: 124 DPYLR 128
           D YLR
Sbjct: 123 DEYLR 127


>NMA0392 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) NmA Neisseria meningitidis Z2491
          Length = 591

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 81/126 (64%)

Query: 3   SFTLHGIPVSKGIAIGRAHLLAPAALDVKHYLIPEEQVEAEVLRLKNAIAAVHQELQIIR 62
           S  LHG+   KGIA+G AHL+A    +V  Y + E   +AE  R   A+ A  +EL+ +R
Sbjct: 2   SIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLR 61

Query: 63  DDLPKEAPPELGAFIDVHALILSDPMLAEVPLNIIRHRYYNAEWALVTQIDGLSAQFDEI 122
             +P+ AP ELGAFI +H ++L+D  L+  P++I+R +  NAEWAL  Q D L+AQFD +
Sbjct: 62  SAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNM 121

Query: 123 EDPYLR 128
           +D YLR
Sbjct: 122 DDAYLR 127


>NMB2044 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) Nme Neisseria meningitidis MC58
          Length = 591

 Score =  119 bits (297), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/126 (45%), Positives = 81/126 (64%)

Query: 3   SFTLHGIPVSKGIAIGRAHLLAPAALDVKHYLIPEEQVEAEVLRLKNAIAAVHQELQIIR 62
           S  LHG+   KGIA+G AHL+A    +V  Y + E   +AE  R   A+ A  +EL+ +R
Sbjct: 2   SIVLHGVAAGKGIAVGCAHLIARGTEEVPQYDVAEADTDAEAERFDAAVKATRKELEQLR 61

Query: 63  DDLPKEAPPELGAFIDVHALILSDPMLAEVPLNIIRHRYYNAEWALVTQIDGLSAQFDEI 122
             +P+ AP ELGAFI +H ++L+D  L+  P++I+R +  NAEWAL  Q D L+AQFD +
Sbjct: 62  SAIPENAPTELGAFISLHLMLLTDVTLSREPVDILREQKINAEWALKQQSDKLAAQFDNM 121

Query: 123 EDPYLR 128
           +D YLR
Sbjct: 122 DDAYLR 127


>XF1402 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) Xfa Xylella fastidiosa 9a5c
          Length = 590

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 55/90 (61%)

Query: 40  VEAEVLRLKNAIAAVHQELQIIRDDLPKEAPPELGAFIDVHALILSDPMLAEVPLNIIRH 99
             AE+  L  A++A  QE+Q++R+ +      E+G F+D+H L++ DP L   P  +I  
Sbjct: 52  TNAELHSLYQAMSAARQEIQVLRERMHGTLSHEVGEFLDLHTLLIDDPELLRSPNELILT 111

Query: 100 RYYNAEWALVTQIDGLSAQFDEIEDPYLRA 129
             Y+AE+AL  Q D L+ +F+ +ED YL++
Sbjct: 112 HNYSAEYALKIQRDRLTTEFEAMEDHYLKS 141


>lin1002 [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI
           component in bacteria) Lin Listeria innocua
          Length = 572

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 6   LHGIPVSKGIAIGRAHLLAPAALDVKHYLIPEEQVEAEVLRLKNAIAAVHQELQIIRDDL 65
           L GI  S GIAI +A+LL    L  +   + +  VE+EV R ++A+     EL  IR+  
Sbjct: 5   LKGIAASDGIAIAKAYLLVEPDLSYEKTEVTD--VESEVKRFESALEVSRTELSTIREKA 62

Query: 66  PKEAPPELGAFIDVHALILSDPMLAEVPLNIIRHRYYNAEWALVTQIDGLSAQFDEIEDP 125
            K+   +     D H L+L+DP L       I++   NAE AL    D     F+ +++ 
Sbjct: 63  AKDLGEDKAQIFDAHLLVLNDPELTGPIEESIKNAKTNAETALQETTDMFIGMFESMDNE 122

Query: 126 YLR 128
           Y+R
Sbjct: 123 YMR 125