BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0339.p         (149 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralsto...   180   1e-45
NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisse...   129   2e-30
NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisse...   129   2e-30
mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorh...   117   1e-26
PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom...   112   2e-25

>RSc0026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralstonia
           solanacearum
          Length = 215

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 106/135 (78%)

Query: 13  RNVSVIQQDLEGGLAMFEDNAFDNVLCLSALQMVKDVEGILREIARVGREATVSFPNFAY 72
           + + VIQQ+LEGGLA+FED +FD V+    LQ + +   +LRE+ RVGRE  VSFPNF Y
Sbjct: 79  KGLHVIQQNLEGGLALFEDKSFDMVILSQTLQTIHNTAQVLREMLRVGRECIVSFPNFGY 138

Query: 73  WSHRVALLRGRMPVSKSLPYEWYDTPNLRCATIKDFEALANEVGLNVLECVALHDGKPVT 132
           W HR+++ RGRMPVSKSLPYEWYDTPN+R  TI+DFEALA +VGL +L+ V LH+G+ V 
Sbjct: 139 WPHRLSIFRGRMPVSKSLPYEWYDTPNVRVLTIRDFEALAPKVGLVILDRVVLHEGRAVH 198

Query: 133 FLPNWRGSLAVFRLK 147
           +  NWRG++AV+R++
Sbjct: 199 WGANWRGNVAVYRVR 213


>NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisseria
           meningitidis MC58
          Length = 193

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

Query: 3   STTPAXECVARNVSVIQQDLEGGLAMFEDNAFDNVLCLSALQMVKDVEGILREIARVGRE 62
            T      ++R V+VIQ DLE GL  F D +FD ++    +Q +++ E ILR + RV ++
Sbjct: 48  DTNSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQ 107

Query: 63  ATVSFPNFAYWSHRVAL-LRGRMPVSKSLPYEWYDTPNLRCATIKDFEALANEVGLNVLE 121
           A VSFPNF YW +RV + L G MPVS+ +PY WYDTPN+   T+KDF+ L  +  + +LE
Sbjct: 108 AIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRILE 167

Query: 122 CVALHDGKPVTFLPNWRGSLAVFRL 146
              +   + V   PN  GSLA +R+
Sbjct: 168 RAVMTGNRQVKHFPNLLGSLAFYRV 192


>NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisseria
           meningitidis Z2491
          Length = 193

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

Query: 3   STTPAXECVARNVSVIQQDLEGGLAMFEDNAFDNVLCLSALQMVKDVEGILREIARVGRE 62
            T      ++R V+VIQ DLE GL  F D +FD ++    +Q +++ E ILR + RV ++
Sbjct: 48  DTDSVIAAMSRGVNVIQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQ 107

Query: 63  ATVSFPNFAYWSHRVAL-LRGRMPVSKSLPYEWYDTPNLRCATIKDFEALANEVGLNVLE 121
           A VSFPNF YW +RV + L G MPVS+ +PY WYDTPN+   T+KDF+ L  +  + VLE
Sbjct: 108 AIVSFPNFGYWRNRVQIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRVLE 167

Query: 122 CVALHDGKPVTFLPNWRGSLAVFRL 146
              +   + V   PN  GSLA +R+
Sbjct: 168 RAVMTGNRQVKHFPNLLGSLAFYRV 192


>mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorhizobium
           loti
          Length = 205

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 89/147 (60%), Gaps = 7/147 (4%)

Query: 9   ECVARNVSVIQQDLEGGLAMFEDNAFDNVLCLSALQMVKDVEGILREIARVGREATVSFP 68
           ECVAR +SVIQ D +  L  + D  FD V+    LQ  ++ + +L E+ R+G  A VSFP
Sbjct: 58  ECVARGLSVIQGDADKDLEFYPDKGFDFVVLSQTLQATRNPKLVLDELLRIGNRAIVSFP 117

Query: 69  NFAYWSHRVAL-LRGRMPVSKSLPYEWYDTPNLRCATIKDFEALANEVGLNVLECVALH- 126
           NF +W  R++L ++GRMPV++ LPY WYDTPN+   TI+DF  L  E+G  V +  AL  
Sbjct: 118 NFGHWRVRLSLFVKGRMPVTQDLPYSWYDTPNIHFCTIRDFVNLCEELGATVEKATALDA 177

Query: 127 DGKPVTF-LPNW----RGSLAVFRLKK 148
            G+ +   +P W     G  AVF LK+
Sbjct: 178 AGQKIGLSMPWWFWNFFGQQAVFLLKR 204


>PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas
           aeruginosa
          Length = 206

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 5/142 (3%)

Query: 10  CVARNVSVIQQDLEGGLAMFEDNAFDNVLCLSALQMVKDVEGILREIARVGREATVSFPN 69
           C+   V+VI+QDL+ GL  F  ++FD V+   ALQ V   + IL E+ RVG+   ++FPN
Sbjct: 53  CIENGVNVIEQDLDKGLGNFASDSFDVVVMTQALQAVHYPDKILEEMLRVGKTCIITFPN 112

Query: 70  FAYWSHRVALLR-GRMPVSKSLPYEWYDTPNLRCATIKDFEALANEVGLNVLECVAL--- 125
           F +W  R  L R GRMPVS+ LPY WY+TPN+   T +DFE L  ++ + VL+ +A+   
Sbjct: 113 FGHWRCRWYLARNGRMPVSEFLPYTWYNTPNIHFCTFQDFERLCRQLRMRVLDRLAVDRD 172

Query: 126 -HDGKPVTFLPNWRGSLAVFRL 146
              G      PN  G + ++R+
Sbjct: 173 HRHGWASRLWPNLLGEIGIYRV 194